Click here to switch to the map view.

The map label for this gene is yscR [H]

Identifier: 170026115

GI number: 170026115

Start: 4302591

End: 4303301

Strand: Reverse

Name: yscR [H]

Synonym: YPK_3902

Alternate gene names: 170026115

Gene position: 4303301-4302591 (Counterclockwise)

Preceding gene: 170026116

Following gene: 170026114

Centisome position: 91.77

GC content: 45.01

Gene sequence:

>711_bases
ATGCGAAACAGCTTACTTTTTATTTTATCTGAAACAGATGACTTATATGAAACAGATCACATGGAATTACTGAATTCATC
CTATCAATTGATCGCCCTGCTTTTCATGCTGTCCGTGTTGCCTTTACTGGTGGTCATGGGGACCGCATTCCTTAAGCTAT
CCGTGGTTTTTTCGTTGTTACGCAATGCGCTGGGTGTTCAACAAGTGCCACCGAATATTGCCATTTACGGGCTGGCGCTG
GTGCTGACTATTTTTATCATGGCACCGGTTGGTTTAGATGTTCAGGCGCGCTTGCAAAATGAAGAGCTGTCCAATGACAT
CGGCGCATTAGCGCACCAAATTGATCAAAATGCGCTGGTGCCCTACCGCGATTTTTTACAGCGCAATACCGATATTGAGC
AAGTCACTTTTTTTAACGACATTGTGCAGAATAAGTGGCCTGAGCGTTACCGCGATAGCGTCAAACCCGATTCACTGCTG
ATATTAATGCCCGCCTTTACCCTCAGTCAGCTTAATGAAGCGTTTAAAATCGGCCTGTTACTTTTTTTACCGTTTGTCGC
CATCGATTTAATTGTATCCAACATTTTGCTGGCGATGGGCATGATGATGGTGTCACCCATGACCCTGTCATTGCCGTTTA
AACTGTTGGTTTTCGTCCTGGTGGATGGCTGGTCATTGGTTCTCGGACAGCTTGTAGGTTCCTATTTATGA

Upstream 100 bases:

>100_bases
GGGATTACAAAACGGCGAAAATATCATGGAATGACAAGATTGAGGTGAACACCCGATACCCCTGAAAGGGGCGGGGGACA
AGACTGTCCATCTTGTTTTT

Downstream 100 bases:

>100_bases
ACAACCATATGAGTAGCTACCACGAGAATGCCATCATTGTTCATCTGGCCACTGAGTTGTTATGGCTGGTTTTACTCCTC
TCTCTGCCCGTAGTCGTGGT

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MRNSLLFILSETDDLYETDHMELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL
ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL

Sequences:

>Translated_236_residues
MRNSLLFILSETDDLYETDHMELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL
ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
>Mature_236_residues
MRNSLLFILSETDDLYETDHMELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLL
ILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL

Specific function: Plays A Role In The Flagellum-Specific Transport System. [C]

COG id: COG4790

COG function: function code U; Type III secretory pathway, component EscR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliP/mopC/spaP family [H]

Homologues:

Organism=Escherichia coli, GI1788259, Length=207, Percent_Identity=39.6135265700483, Blast_Score=145, Evalue=3e-36,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005838
- InterPro:   IPR005773 [H]

Pfam domain/function: PF00813 FliP [H]

EC number: NA

Molecular weight: Translated: 26464; Mature: 26464

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS01060 FLIP_1 ; PS01061 FLIP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNSLLFILSETDDLYETDHMELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLL
CCCCEEEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALV
HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLL
CHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHH
LFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRNSLLFILSETDDLYETDHMELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLL
CCCCEEEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALV
HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLL
CHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHH
LFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]