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The map label for this gene is ssaQ [H]

Identifier: 170026116

GI number: 170026116

Start: 4303368

End: 4304330

Strand: Reverse

Name: ssaQ [H]

Synonym: YPK_3903

Alternate gene names: 170026116

Gene position: 4304330-4303368 (Counterclockwise)

Preceding gene: 170026117

Following gene: 170026115

Centisome position: 91.79

GC content: 54.52

Gene sequence:

>963_bases
GTGCTGACGAATCTGACGCCTGAGTTACTCGCCCTCAGCACCTTGATCGGGAGTGGCCGGCAGACAGCAGGGGTGTCGGT
GGCCTTGACGGAGATTGACGGTGAGGGCGTTTATCTGCCACTGCACTATGGCGGCCAAGAGTGTGGGTTGTGGTTATCAC
AATCCTGTTGGCAGCACTGGTTGAACACGACGTTGGCAACCGATAACCCCCAGTTGTTGGCCGCAGAGTTAGTGATCGCC
ATGGCTAATTGGGCCGTCACCCCATTGTTAGCGCCGTTTACCGATCTGGTGGTATTGGCCGAGTCACCACAGAAGAGGTC
ACTGCCAAAGCAGTGGGCGGTGACGGTGGCTTTCGAGCTGGAGGGACAGCCGATTATCGGTGTGTTACAGGATTGGCCGC
AGGCGGTATTGGCCGACACTTTGTCTCATTGGCCGTGCGAAGCGGTCACCGCCCCTGATTTGCTTTGGCAATCTGGATTG
GTGGCGGGTTGGTGCCACTTATCATTGCGTCAATTACAGCAGTTAAGGCCGGGCGAGGGTTTACGCCTCTCTATGGCGGC
GGAATTGGATAAAGAAGCGTGCTGGTTATGGCATCACGCATCGCCACAAATTTATATCAAGCTAGAGGGTGGGAACAGAA
TGACAATTCAACAGATTAATGAAGCGAGTGACCCGCTGGCCTGCGGCAGTCGCGCTGAATCACTGCCTTTGGCGGCGGTA
CAATTTGAGGATTTACCGCAAACGCTGGTGATGGAAATTGGCCGTTTGACCTTGCCTCTGGGGGAGATAAAACAACTCGC
GGTTGGTCAGACGCTGGCGTGCCAAACCCACTGTTATGGCGAGGTGAATATCTGCCTGAATGGGCAATCCGTTGGCCGTG
GCAGTTTACTCCGGTGCGATGAACAACTGGTGGTCAGAATTGCACAATGGGGATTACAAAACGGCGAAAATATCATGGAA
TGA

Upstream 100 bases:

>100_bases
AATACAGAGAGCAAACTGATTGAACGCTTACAGCGCATACAAAACCGCTGGCAGCGGCAACTGCATCAGTTAGGGTTCCC
GTGTTTACTGGAGGTCACCT

Downstream 100 bases:

>100_bases
CAAGATTGAGGTGAACACCCGATACCCCTGAAAGGGGCGGGGGACAAGACTGTCCATCTTGTTTTTATGCGAAACAGCTT
ACTTTTTATTTTATCTGAAA

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MLTNLTPELLALSTLIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHWLNTTLATDNPQLLAAELVIA
MANWAVTPLLAPFTDLVVLAESPQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQAVLADTLSHWPCEAVTAPDLLWQSGL
VAGWCHLSLRQLQQLRPGEGLRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESLPLAAV
QFEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEQLVVRIAQWGLQNGENIME

Sequences:

>Translated_320_residues
MLTNLTPELLALSTLIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHWLNTTLATDNPQLLAAELVIA
MANWAVTPLLAPFTDLVVLAESPQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQAVLADTLSHWPCEAVTAPDLLWQSGL
VAGWCHLSLRQLQQLRPGEGLRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESLPLAAV
QFEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEQLVVRIAQWGLQNGENIME
>Mature_320_residues
MLTNLTPELLALSTLIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHWLNTTLATDNPQLLAAELVIA
MANWAVTPLLAPFTDLVVLAESPQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQAVLADTLSHWPCEAVTAPDLLWQSGL
VAGWCHLSLRQLQQLRPGEGLRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESLPLAAV
QFEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEQLVVRIAQWGLQNGENIME

Specific function: Part of a type III secretion system [H]

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001172
- InterPro:   IPR001543
- InterPro:   IPR013385 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 34967; Mature: 34967

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTNLTPELLALSTLIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHW
CCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEECCCHHHCHHHHHHHHHHH
LNTTLATDNPQLLAAELVIAMANWAVTPLLAPFTDLVVLAESPQKRSLPKQWAVTVAFEL
HCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHEEEEECCCCHHCCCCCEEEEEEEEE
EGQPIIGVLQDWPQAVLADTLSHWPCEAVTAPDLLWQSGLVAGWCHLSLRQLQQLRPGEG
CCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
LRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESLPLAAV
EEEEHHHHCCCCCEEEEECCCCEEEEEECCCCEEEHEECCCCCCCCCCCCCCCCCCEEEE
QFEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD
EHHCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCEECC
EQLVVRIAQWGLQNGENIME
HHHHHHHHHHCCCCCCHHCC
>Mature Secondary Structure
MLTNLTPELLALSTLIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHW
CCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEECCCHHHCHHHHHHHHHHH
LNTTLATDNPQLLAAELVIAMANWAVTPLLAPFTDLVVLAESPQKRSLPKQWAVTVAFEL
HCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHEEEEECCCCHHCCCCCEEEEEEEEE
EGQPIIGVLQDWPQAVLADTLSHWPCEAVTAPDLLWQSGLVAGWCHLSLRQLQQLRPGEG
CCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
LRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESLPLAAV
EEEEHHHHCCCCCEEEEECCCCEEEEEECCCCEEEHEECCCCCCCCCCCCCCCCCCEEEE
QFEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD
EHHCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCEECC
EQLVVRIAQWGLQNGENIME
HHHHHHHHHHCCCCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 9140973; 9023191 [H]