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The map label for this gene is yscS [H]

Identifier: 170026114

GI number: 170026114

Start: 4302301

End: 4302594

Strand: Reverse

Name: yscS [H]

Synonym: YPK_3901

Alternate gene names: 170026114

Gene position: 4302594-4302301 (Counterclockwise)

Preceding gene: 170026115

Following gene: 170026113

Centisome position: 91.75

GC content: 47.62

Gene sequence:

>294_bases
ATGAACAACCATATGAGTAGCTACCACGAGAATGCCATCATTGTTCATCTGGCCACTGAGTTGTTATGGCTGGTTTTACT
CCTCTCTCTGCCCGTAGTCGTGGTGGCTTCAACGGTCGGGTTGGTGATTAGCCTGGTACAAGCCCTGACCCAAATACAGG
ATCAAACCCTGCAATTTTTGATTAAGTTGTTGGCGGTATCAGCCACATTACTGATGACCTACCATTGGATGGGGGCGACA
TTGCTGAATTATACCCAGCAGAGTTTTTTGCAGATAACCAGTATGCGGCCCTGA

Upstream 100 bases:

>100_bases
TGGTGTCACCCATGACCCTGTCATTGCCGTTTAAACTGTTGGTTTTCGTCCTGGTGGATGGCTGGTCATTGGTTCTCGGA
CAGCTTGTAGGTTCCTATTT

Downstream 100 bases:

>100_bases
GATGATTGACGTCCTCCCCGGTCTGACCGCACTCGCATTAGCCATGATGCGGCCCTACGGTATCTTACTGATATTACCGC
TGTTTACCGCCCGCAGTTTG

Product: HrpO family type III secretion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MNNHMSSYHENAIIVHLATELLWLVLLLSLPVVVVASTVGLVISLVQALTQIQDQTLQFLIKLLAVSATLLMTYHWMGAT
LLNYTQQSFLQITSMRP

Sequences:

>Translated_97_residues
MNNHMSSYHENAIIVHLATELLWLVLLLSLPVVVVASTVGLVISLVQALTQIQDQTLQFLIKLLAVSATLLMTYHWMGAT
LLNYTQQSFLQITSMRP
>Mature_97_residues
MNNHMSSYHENAIIVHLATELLWLVLLLSLPVVVVASTVGLVISLVQALTQIQDQTLQFLIKLLAVSATLLMTYHWMGAT
LLNYTQQSFLQITSMRP

Specific function: Component of the Yop secretion machinery [H]

COG id: COG4794

COG function: function code U; Type III secretory pathway, component EscS

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliQ/MopD/SpaQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002191
- InterPro:   IPR006306 [H]

Pfam domain/function: PF01313 Bac_export_3 [H]

EC number: NA

Molecular weight: Translated: 10864; Mature: 10864

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNHMSSYHENAIIVHLATELLWLVLLLSLPVVVVASTVGLVISLVQALTQIQDQTLQFL
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKLLAVSATLLMTYHWMGATLLNYTQQSFLQITSMRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNNHMSSYHENAIIVHLATELLWLVLLLSLPVVVVASTVGLVISLVQALTQIQDQTLQFL
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKLLAVSATLLMTYHWMGATLLNYTQQSFLQITSMRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8300512; 9746557; 9748454; 11586360 [H]