Click here to switch to the map view.

The map label for this gene is rfaQ [H]

Identifier: 170025862

GI number: 170025862

Start: 4025451

End: 4026644

Strand: Reverse

Name: rfaQ [H]

Synonym: YPK_3647

Alternate gene names: 170025862

Gene position: 4026644-4025451 (Counterclockwise)

Preceding gene: 170025863

Following gene: 170025861

Centisome position: 85.87

GC content: 47.32

Gene sequence:

>1194_bases
ATGATGGCGCATCCTCTGATGGCGCATCCCATGATAAATACATCAAATAAGACAGCATCACCTGCCGGGCAACTTTCTGC
TCCCGCTTCTCAAACCGGTGCCAGCCACTTGCCGGAAGTACTGCGGAATAAAGAGCATGTTGCGCGCATTTTAGTGATTA
AGTTACGGCATTTCGGCGATGTTCTACTGACGACGCCGCTACTGAGTACGCTGAAAGCCAATTATCCGCAGGCTAAAATC
GATGTACTGCTGTATGGCGGTACGCAGGATATGTTGCGTGAAAACAAGGCGATCAATCATGCCTTTATTGTTGATCGGGG
CCTGAAGCATGCAGGATTAAAGGCGCAAATCAGTGGCGAAAAAGCACTGTTTAGCGCCCTAAAAAAACAACATTATGATT
TGATTCTTAATTTATCCGATCAATGGCGGGCTGCGGCGTATTGCCGTTTGTTAAAACCCACGTTTAGTATCGGTTTCCAC
TACCCAAAACGGGACAATTGGCTCTGGCGTTACTGCCATTCCACATTGGTTGAGATCCCTAATGCTGCAGAACGGCACAC
GGTACTCAATAATCTGGATATTCTCTCACCACTACAACTGACCGACATCAGGACCGACGTCACCATGTCCTATGGGCCGC
ATGATATCGAGCGGGCAAAGCAGTTGTGCCAACAGCATAATATTGAACACTATATTTTGATTCAGCCTTCCGCCCGCTGG
AAATTCAAAACCTGGGCCAGCGAATCCTTCAGTGAATTGATCAACCACCTCACTCAACAAGGTGAAACTGTTCTGCTGAC
GGGCAGTAAAGATCAGGCTGAATTGGATTACATCGCTGAGATTATTGCTGGCTGCACACAACCGGAAAAGGTGATCAATT
TATCGGGTCAATTGGCATTGCCTGAACTGGCGGTCTTAATTGATAACGCCAAATTATTTATTGGTGTTGATTCTGTGGCA
ATGCATATGGCTGCTGCGTTACAGACGCCAGCAGTGGTACTATTTGGCCCGAGTAATCTTAATCAATGGCACCCGTGGCA
GGCTCCACATACTTTACTCTGGGCTGGCAATTACCGCACTTTGCCGCATCCCAATGAAATAGATACTGACACTACTGATC
GCTATCTGAACGCAATCCCAGTTAGTGATGTCATAGACGCAGTTGATTCCTGGCGAGTTGCCAAAGGGAATTAG

Upstream 100 bases:

>100_bases
CCGGGAGGCTTCTATCAATGACTTTTAACATATTCATATGCTAAAACGATTGCCATGCTGCAAACCCCTGATATAGCATA
ATTGCCCTCTTTCGTTGCCA

Downstream 100 bases:

>100_bases
TGGGTCAGTCGCTTTATTTTTCCTAACCAGCTCGAGCTGAGAAAATTATGACAACTTTATCACCGGCAATTCCGGTCAAT
CGCCGTAGTGAAATGCTGTG

Product: lipopolysaccharide heptosyltransferase III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MMAHPLMAHPMINTSNKTASPAGQLSAPASQTGASHLPEVLRNKEHVARILVIKLRHFGDVLLTTPLLSTLKANYPQAKI
DVLLYGGTQDMLRENKAINHAFIVDRGLKHAGLKAQISGEKALFSALKKQHYDLILNLSDQWRAAAYCRLLKPTFSIGFH
YPKRDNWLWRYCHSTLVEIPNAAERHTVLNNLDILSPLQLTDIRTDVTMSYGPHDIERAKQLCQQHNIEHYILIQPSARW
KFKTWASESFSELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKVINLSGQLALPELAVLIDNAKLFIGVDSVA
MHMAAALQTPAVVLFGPSNLNQWHPWQAPHTLLWAGNYRTLPHPNEIDTDTTDRYLNAIPVSDVIDAVDSWRVAKGN

Sequences:

>Translated_397_residues
MMAHPLMAHPMINTSNKTASPAGQLSAPASQTGASHLPEVLRNKEHVARILVIKLRHFGDVLLTTPLLSTLKANYPQAKI
DVLLYGGTQDMLRENKAINHAFIVDRGLKHAGLKAQISGEKALFSALKKQHYDLILNLSDQWRAAAYCRLLKPTFSIGFH
YPKRDNWLWRYCHSTLVEIPNAAERHTVLNNLDILSPLQLTDIRTDVTMSYGPHDIERAKQLCQQHNIEHYILIQPSARW
KFKTWASESFSELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKVINLSGQLALPELAVLIDNAKLFIGVDSVA
MHMAAALQTPAVVLFGPSNLNQWHPWQAPHTLLWAGNYRTLPHPNEIDTDTTDRYLNAIPVSDVIDAVDSWRVAKGN
>Mature_397_residues
MMAHPLMAHPMINTSNKTASPAGQLSAPASQTGASHLPEVLRNKEHVARILVIKLRHFGDVLLTTPLLSTLKANYPQAKI
DVLLYGGTQDMLRENKAINHAFIVDRGLKHAGLKAQISGEKALFSALKKQHYDLILNLSDQWRAAAYCRLLKPTFSIGFH
YPKRDNWLWRYCHSTLVEIPNAAERHTVLNNLDILSPLQLTDIRTDVTMSYGPHDIERAKQLCQQHNIEHYILIQPSARW
KFKTWASESFSELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKVINLSGQLALPELAVLIDNAKLFIGVDSVA
MHMAAALQTPAVVLFGPSNLNQWHPWQAPHTLLWAGNYRTLPHPNEIDTDTTDRYLNAIPVSDVIDAVDSWRVAKGN

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=336, Percent_Identity=39.8809523809524, Blast_Score=239, Evalue=3e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 44404; Mature: 44404

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAHPLMAHPMINTSNKTASPAGQLSAPASQTGASHLPEVLRNKEHVARILVIKLRHFGD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCH
VLLTTPLLSTLKANYPQAKIDVLLYGGTQDMLRENKAINHAFIVDRGLKHAGLKAQISGE
HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCEEEECCH
KALFSALKKQHYDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDNWLWRYCHSTLVEIP
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHCC
NAAERHTVLNNLDILSPLQLTDIRTDVTMSYGPHDIERAKQLCQQHNIEHYILIQPSARW
CCHHHHHHHHCCCCCCCCCCEECCCCEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCE
KFKTWASESFSELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKVINLSGQLAL
EEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCC
PELAVLIDNAKLFIGVDSVAMHMAAALQTPAVVLFGPSNLNQWHPWQAPHTLLWAGNYRT
CCEEEEEECCEEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCC
LPHPNEIDTDTTDRYLNAIPVSDVIDAVDSWRVAKGN
CCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCEECCCC
>Mature Secondary Structure
MMAHPLMAHPMINTSNKTASPAGQLSAPASQTGASHLPEVLRNKEHVARILVIKLRHFGD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCH
VLLTTPLLSTLKANYPQAKIDVLLYGGTQDMLRENKAINHAFIVDRGLKHAGLKAQISGE
HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCEEEECCH
KALFSALKKQHYDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDNWLWRYCHSTLVEIP
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHCC
NAAERHTVLNNLDILSPLQLTDIRTDVTMSYGPHDIERAKQLCQQHNIEHYILIQPSARW
CCHHHHHHHHCCCCCCCCCCEECCCCEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCE
KFKTWASESFSELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKVINLSGQLAL
EEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCC
PELAVLIDNAKLFIGVDSVAMHMAAALQTPAVVLFGPSNLNQWHPWQAPHTLLWAGNYRT
CCEEEEEECCEEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCC
LPHPNEIDTDTTDRYLNAIPVSDVIDAVDSWRVAKGN
CCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1732225; 1447141; 8041620; 9278503 [H]