| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is 169628500
Identifier: 169628500
GI number: 169628500
Start: 1412431
End: 1413702
Strand: Reverse
Name: 169628500
Synonym: MAB_1409c
Alternate gene names: NA
Gene position: 1413702-1412431 (Counterclockwise)
Preceding gene: 169628501
Following gene: 169628499
Centisome position: 27.9
GC content: 64.07
Gene sequence:
>1272_bases ATGTCCACTCCGACGGCGGATTCGCCGACTATCAATCAGGTGAATCGCGGGCCGGTTCTCCTGCTGCTCTTCGCATCTGT CGTCGCAGCCATCGGCAACGGTGTCTCTATCGTCGCACTGCCCTGGCTTGTATTGCAGCGCAACGGTTCCGCGGCTGACG CTGCCATCGTGGCGGCGGCAGGAACCCTTCCGCTGGTCTTCTCGACACTCATCTCGGGCACCGCCGTCGACTACTTCGGA CGGCGCGTCATGTCGATCTTCTCCGACGTCCTGTCCCTCGTATCGGTCTCGGCCATCCCGATCCTTGCGATGACCACCGG ACTCAACGTCCCGCTGTTGGCCGCGCTGGCCGCCCTCGGCGCCATCTTCGATCCGGCAGGTATCACCGCACGCGAGTCCA TGCTGCCGGCGGCCGCGAAGTCGGCCGGGTGGTCTCTGGACAAGATGAACAGCATGTACGAGGCGACCTTCAATGTCGCC TACATCGTGGGGCCCGGCCTCGGCGGGCTGCTCATCGCGTCCGTCGGCGGCGTCAACACCATGTGGGTCACCGCGGCCAG CTTCGTCGTGTCGATCATCGCCATCGCCCTCCTCAAGGTCGACGGCGCCGGAAAGCCCGCGCACGAAACCCGGCCGACGG GCGTGTTCAGTGGTGTGCTCGAGGGCTTGAGGTTCTTCTGGAACATCAAGATCCTGCGCACCATCGCGCTGGTCGACATG GCGATTACCGCGCTGTACCTGCCCATCGAAAGCGTGTTGCTGCCCAAGCACTTCAGCGATATCGGCGCACCCCAACAGCT CGGCTGGATGCTCATGGCGATCTCCGTGGGCGGACTCCTCGGAGCGCTCGGCTATGCGACCATGGTGCGCCACTTCCAGC GTCGCACCATCATGCTGTGCGCCACCTTTACCGCCGGCATAACCACATTGGGTATGTCGCTGCTCCCACCGATCGCCGTA CTGCTGGTGCTGGCCGCCTGCCTCGGCTTCATCTACGGCCCGGTCGCACCGATCGCCAACTTCGTGATGCAGACCCGCTC TCCCGAGCACCTGCGCGGCCGTGTGGTCGGCGTCATGACTTCCACCGCGTATTGCGCGGGCCCGTTGGGTTTCATGCTCG CCGGTCCCATCGCCGACAAGTTTGGTGTCGCCACAACTCTGGTCATCCTCGGTGCACCGATGCTGCTCATCGCCATCGCG AGTACTCGGATGCGTGTCTTGCGAGAATTGGACCAGGACGAACCGCAGCCCGACAAGGAACCAACTCGGTAG
Upstream 100 bases:
>100_bases CTGGAGGCGACCGCCCAGATCATCCGTGCAGCGGTGCAAGCCAACTAGCCAAGAAAATCGCTCGACCAACCCCGCCACCC GCTGCTAGGTTTCGTGCGAC
Downstream 100 bases:
>100_bases GGTCGGCTCCGTGGCTGATTTCGAGGGAAAAACTGCACTGATCACGGGCGGCGCGCGCGGTATGGGCCGGTCGCACGCGG TGGCGCTGGCCGAGGCCGGC
Product: putative drug antiporter protein precursor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MSTPTADSPTINQVNRGPVLLLLFASVVAAIGNGVSIVALPWLVLQRNGSAADAAIVAAAGTLPLVFSTLISGTAVDYFG RRVMSIFSDVLSLVSVSAIPILAMTTGLNVPLLAALAALGAIFDPAGITARESMLPAAAKSAGWSLDKMNSMYEATFNVA YIVGPGLGGLLIASVGGVNTMWVTAASFVVSIIAIALLKVDGAGKPAHETRPTGVFSGVLEGLRFFWNIKILRTIALVDM AITALYLPIESVLLPKHFSDIGAPQQLGWMLMAISVGGLLGALGYATMVRHFQRRTIMLCATFTAGITTLGMSLLPPIAV LLVLAACLGFIYGPVAPIANFVMQTRSPEHLRGRVVGVMTSTAYCAGPLGFMLAGPIADKFGVATTLVILGAPMLLIAIA STRMRVLRELDQDEPQPDKEPTR
Sequences:
>Translated_423_residues MSTPTADSPTINQVNRGPVLLLLFASVVAAIGNGVSIVALPWLVLQRNGSAADAAIVAAAGTLPLVFSTLISGTAVDYFG RRVMSIFSDVLSLVSVSAIPILAMTTGLNVPLLAALAALGAIFDPAGITARESMLPAAAKSAGWSLDKMNSMYEATFNVA YIVGPGLGGLLIASVGGVNTMWVTAASFVVSIIAIALLKVDGAGKPAHETRPTGVFSGVLEGLRFFWNIKILRTIALVDM AITALYLPIESVLLPKHFSDIGAPQQLGWMLMAISVGGLLGALGYATMVRHFQRRTIMLCATFTAGITTLGMSLLPPIAV LLVLAACLGFIYGPVAPIANFVMQTRSPEHLRGRVVGVMTSTAYCAGPLGFMLAGPIADKFGVATTLVILGAPMLLIAIA STRMRVLRELDQDEPQPDKEPTR >Mature_422_residues STPTADSPTINQVNRGPVLLLLFASVVAAIGNGVSIVALPWLVLQRNGSAADAAIVAAAGTLPLVFSTLISGTAVDYFGR RVMSIFSDVLSLVSVSAIPILAMTTGLNVPLLAALAALGAIFDPAGITARESMLPAAAKSAGWSLDKMNSMYEATFNVAY IVGPGLGGLLIASVGGVNTMWVTAASFVVSIIAIALLKVDGAGKPAHETRPTGVFSGVLEGLRFFWNIKILRTIALVDMA ITALYLPIESVLLPKHFSDIGAPQQLGWMLMAISVGGLLGALGYATMVRHFQRRTIMLCATFTAGITTLGMSLLPPIAVL LVLAACLGFIYGPVAPIANFVMQTRSPEHLRGRVVGVMTSTAYCAGPLGFMLAGPIADKFGVATTLVILGAPMLLIAIAS TRMRVLRELDQDEPQPDKEPTR
Specific function: Could be involved in tetracycline efflux [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 44157; Mature: 44026
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPTADSPTINQVNRGPVLLLLFASVVAAIGNGVSIVALPWLVLQRNGSAADAAIVAAA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHC GTLPLVFSTLISGTAVDYFGRRVMSIFSDVLSLVSVSAIPILAMTTGLNVPLLAALAALG CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH AIFDPAGITARESMLPAAAKSAGWSLDKMNSMYEATFNVAYIVGPGLGGLLIASVGGVNT HHCCCCCCCHHHHHCCHHHHHCCCCHHHHHHHHHHHHEEEEEECCCCHHHHHHHCCCCHH MWVTAASFVVSIIAIALLKVDGAGKPAHETRPTGVFSGVLEGLRFFWNIKILRTIALVDM HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITALYLPIESVLLPKHFSDIGAPQQLGWMLMAISVGGLLGALGYATMVRHFQRRTIMLC HHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE ATFTAGITTLGMSLLPPIAVLLVLAACLGFIYGPVAPIANFVMQTRSPEHLRGRVVGVMT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEEH STAYCAGPLGFMLAGPIADKFGVATTLVILGAPMLLIAIASTRMRVLRELDQDEPQPDKE HHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PTR CCC >Mature Secondary Structure STPTADSPTINQVNRGPVLLLLFASVVAAIGNGVSIVALPWLVLQRNGSAADAAIVAAA CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHC GTLPLVFSTLISGTAVDYFGRRVMSIFSDVLSLVSVSAIPILAMTTGLNVPLLAALAALG CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH AIFDPAGITARESMLPAAAKSAGWSLDKMNSMYEATFNVAYIVGPGLGGLLIASVGGVNT HHCCCCCCCHHHHHCCHHHHHCCCCHHHHHHHHHHHHEEEEEECCCCHHHHHHHCCCCHH MWVTAASFVVSIIAIALLKVDGAGKPAHETRPTGVFSGVLEGLRFFWNIKILRTIALVDM HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITALYLPIESVLLPKHFSDIGAPQQLGWMLMAISVGGLLGALGYATMVRHFQRRTIMLC HHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE ATFTAGITTLGMSLLPPIAVLLVLAACLGFIYGPVAPIANFVMQTRSPEHLRGRVVGVMT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEEH STAYCAGPLGFMLAGPIADKFGVATTLVILGAPMLLIAIASTRMRVLRELDQDEPQPDKE HHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PTR CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]