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The map label for this gene is cspA [H]

Identifier: 169627971

GI number: 169627971

Start: 869538

End: 869951

Strand: Direct

Name: cspA [H]

Synonym: MAB_0872

Alternate gene names: 169627971

Gene position: 869538-869951 (Clockwise)

Preceding gene: 169627965

Following gene: 169627972

Centisome position: 17.16

GC content: 65.7

Gene sequence:

>414_bases
GTGCCAACCGGCAAGGTCAAGTGGTACGACGCCGAGAAGGGCTTCGGCTTCCTGTCGCAAGAGGACGGCGAGGACGTGTA
CGTCCGGTCCTCGGCGCTGCCTGCTGGCGTTGAGGGACTCAAGGCCGGACAAAAGGTCGAGTTCGGCATGGCCGCCGGCC
GTCGTGGGCCGCAGGCATTGAGCCTCAAGCTCATCGACGCGCCACCGTCGGTGCAGAAGACGCGCCGCGAGAGCAGCGGG
CCGGTCAACCACAAGCACACCACCGACGAACTGCACGGAATGATCGAAGACATGATCACGCTGCTGGAGGGCACGGTGCA
GACCGAGCTGCGTAAGGGGCGTTACCCGGACCGCAAGATCGCCCGCAAGGTGTCCGAGGTTGTCCGCGCTGTCGCCAGCG
AGTTGGACGCCTGA

Upstream 100 bases:

>100_bases
GGGGTCATAAGTCCAGCGTAGCGACCACTTGCGCGAGCCGAGTAGGATGACCAGTCACCGCGTCCTGATTGGGGCGCGTT
AATCATGTGAGGTGAGTGCA

Downstream 100 bases:

>100_bases
TCTGACACCCGTCCGCGCCGAGGATGTGATGGCGGCGCTCGACGCCGCCGGCGATTCTGATCGTGCCGCTAAGTCGGCGC
GGTTCTTCAAGACCGGGCCC

Product: cold shock-like protein B CspB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MPTGKVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQKVEFGMAAGRRGPQALSLKLIDAPPSVQKTRRESSG
PVNHKHTTDELHGMIEDMITLLEGTVQTELRKGRYPDRKIARKVSEVVRAVASELDA

Sequences:

>Translated_137_residues
MPTGKVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQKVEFGMAAGRRGPQALSLKLIDAPPSVQKTRRESSG
PVNHKHTTDELHGMIEDMITLLEGTVQTELRKGRYPDRKIARKVSEVVRAVASELDA
>Mature_136_residues
PTGKVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQKVEFGMAAGRRGPQALSLKLIDAPPSVQKTRRESSGP
VNHKHTTDELHGMIEDMITLLEGTVQTELRKGRYPDRKIARKVSEVVRAVASELDA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 14978; Mature: 14847

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGKVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQKVEFGMAAGRRGPQAL
CCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCCHHHHHCCCCCCCEE
SLKLIDAPPSVQKTRRESSGPVNHKHTTDELHGMIEDMITLLEGTVQTELRKGRYPDRKI
EEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ARKVSEVVRAVASELDA
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PTGKVKWYDAEKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQKVEFGMAAGRRGPQAL
CCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCCHHHHHCCCCCCCEE
SLKLIDAPPSVQKTRRESSGPVNHKHTTDELHGMIEDMITLLEGTVQTELRKGRYPDRKI
EEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ARKVSEVVRAVASELDA
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]