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The map label for this gene is rraA [C]

Identifier: 169627212

GI number: 169627212

Start: 108866

End: 109354

Strand: Reverse

Name: rraA [C]

Synonym: MAB_0107c

Alternate gene names: 169627212

Gene position: 109354-108866 (Counterclockwise)

Preceding gene: 169627213

Following gene: 169627211

Centisome position: 2.16

GC content: 64.42

Gene sequence:

>489_bases
ATGACGACCGCACCGATCACCCCCCGACCGACCGCCGACCTGGGAGACGAGCTCGGCATCGATATGGCCAGCTGCGATCT
TCAGCTCAATCAGTACGGCGCGCGGCCGGTGTTCGCCGGAGTCATCACCACGGTGCGCTGCCACCATGACAATGCACTAT
TGAAATCCGTTCTGTCCGAACCGAGTTCGGGCGGCGTACTAGTCATCGACGGTGGTGGCTCGCTGCACTGTGCCCTAGTG
GGCGACGTGATCGCTGGCCTCGCCGTCGCCAGTGGCTGGTCCGGCCTTGTCATCAACGGCGTCGTCCGGGACAGTGCCGA
ACTGGCGACCATGGACATCGGCATCAAGGCTCTCGGCACCAACCCCCGTAAGGGCCACAAGACCGGGGCGGGGGAGCGTG
ATGTCGTCGTCAGCTTCGGCGGTATCGACTTCACGCCGGGCGCGATCTGCTATGCCGACCATGACGGCGTTGTCGTGGTT
CCTGCCTGA

Upstream 100 bases:

>100_bases
CGCCGCCGGGAGGACTCCGTCGAATCGGAGTGATCGGTCCCGCCGGACTACCGGACCGGTGGCCTCTGAGAGCTGCCCCA
CCGGGCAATAAACTCGGGGT

Downstream 100 bases:

>100_bases
TGTCCGTGCGGCGGCTGGCGGAGGCACTGCGGGGAGCACCGGCGCCGCTGGCCGCGGTCGACATAGACGCGGCGCGGAGC
AACGCCGCGACGCTGGTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MTTAPITPRPTADLGDELGIDMASCDLQLNQYGARPVFAGVITTVRCHHDNALLKSVLSEPSSGGVLVIDGGGSLHCALV
GDVIAGLAVASGWSGLVINGVVRDSAELATMDIGIKALGTNPRKGHKTGAGERDVVVSFGGIDFTPGAICYADHDGVVVV
PA

Sequences:

>Translated_162_residues
MTTAPITPRPTADLGDELGIDMASCDLQLNQYGARPVFAGVITTVRCHHDNALLKSVLSEPSSGGVLVIDGGGSLHCALV
GDVIAGLAVASGWSGLVINGVVRDSAELATMDIGIKALGTNPRKGHKTGAGERDVVVSFGGIDFTPGAICYADHDGVVVV
PA
>Mature_161_residues
TTAPITPRPTADLGDELGIDMASCDLQLNQYGARPVFAGVITTVRCHHDNALLKSVLSEPSSGGVLVIDGGGSLHCALVG
DVIAGLAVASGWSGLVINGVVRDSAELATMDIGIKALGTNPRKGHKTGAGERDVVVSFGGIDFTPGAICYADHDGVVVVP
A

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=149, Percent_Identity=42.2818791946309, Blast_Score=111, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 16418; Mature: 16287

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAPITPRPTADLGDELGIDMASCDLQLNQYGARPVFAGVITTVRCHHDNALLKSVLSE
CCCCCCCCCCCCCCCHHHCCEEEHEEEEECCCCCCHHHEEEEEEEEECCCHHHHHHHHCC
PSSGGVLVIDGGGSLHCALVGDVIAGLAVASGWSGLVINGVVRDSAELATMDIGIKALGT
CCCCCEEEEECCCCEEEEEHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCEEEECC
NPRKGHKTGAGERDVVVSFGGIDFTPGAICYADHDGVVVVPA
CCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEC
>Mature Secondary Structure 
TTAPITPRPTADLGDELGIDMASCDLQLNQYGARPVFAGVITTVRCHHDNALLKSVLSE
CCCCCCCCCCCCCCHHHCCEEEHEEEEECCCCCCHHHEEEEEEEEECCCHHHHHHHHCC
PSSGGVLVIDGGGSLHCALVGDVIAGLAVASGWSGLVINGVVRDSAELATMDIGIKALGT
CCCCCEEEEECCCCEEEEEHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCEEEECC
NPRKGHKTGAGERDVVVSFGGIDFTPGAICYADHDGVVVVPA
CCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA