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The map label for this gene is ypdC [C]

Identifier: 169627171

GI number: 169627171

Start: 63484

End: 64212

Strand: Reverse

Name: ypdC [C]

Synonym: MAB_0066c

Alternate gene names: 169627171

Gene position: 64212-63484 (Counterclockwise)

Preceding gene: 169627176

Following gene: 169627170

Centisome position: 1.27

GC content: 67.76

Gene sequence:

>729_bases
ATGGTCTGGACAGGCGCGGCAGTCATCGAACCCGGGCGGCTCGTCTACCGCGGGGCGCTGGGGGATACCCATCGCCATAC
TCATGCGGCGGTGCAGATCGCCATCGCCCTGGACGGGACACTGCAGCTCACCGACGGCGCCGATCGCAGGGTCAGCACCC
GCGCCGCCGTCATTCCCGCGGGAGCGCAACACACCGTGCACGGCGGCACATCGACCGGCCTGATGATCTATCTGGAACCC
ACCTGCTTCGAAGGCCGCGCTCTCGGCGCGCTGTTCGACAATGCCGCACGCGACGACGCCACCGCCTGGTGCGCCGCCGC
ATCAGAACTCAGTGACATACAAGATGATTCGTCCTCGGCAGAGAGCGTCATCGCCCGACTTGTCGGCGATGTGCACGCGT
CAGAACCACACGAAAGTGTCCGGGAGGCCATCCGGCTGCTGCCCGGGATGCTGACCGGGCCGGTGCGGTTGGCCGAAGTG
GCGCGGGTCGTACATCTCTCCGCGGACCGGCTGGGCCGCATGTTCGCCCGCGATACCGGCATGTCCTTCCCCGCGTATGT
CCGCTGGGCACGGCTCATCCGCACCATCGAGGTCGCGCGCACCGGAGGCACCCTGACCGATGCCGCGCACGCGGCCGGTT
TCAGCGACAGTTCCCACGCCAACCGGGCGTTTCACGAGATGTTCGGCATCACCCCGGTGGAGCTGCACCGCAGTGTGCAG
CTGAGCTAG

Upstream 100 bases:

>100_bases
GCCGTATCGCACAAACCAAATAGCCATGCAAGCAGTCTTGGTTTTTGTGTGTATGCCGCGCATGTACAGATCCGTTGACC
TGTCGCAGATACTCAAAGGC

Downstream 100 bases:

>100_bases
CGGAGCCCGGTGCGCATGGATTTAGACGCGTGCTTCGATAACACCATGCAACGGACCATCTACACCGAGGACCACGAGGC
ATTCCGCGAGTCCGTGAAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Arac Domain Protein; Arac Family Transcriptional Regulator; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MVWTGAAVIEPGRLVYRGALGDTHRHTHAAVQIAIALDGTLQLTDGADRRVSTRAAVIPAGAQHTVHGGTSTGLMIYLEP
TCFEGRALGALFDNAARDDATAWCAAASELSDIQDDSSSAESVIARLVGDVHASEPHESVREAIRLLPGMLTGPVRLAEV
ARVVHLSADRLGRMFARDTGMSFPAYVRWARLIRTIEVARTGGTLTDAAHAAGFSDSSHANRAFHEMFGITPVELHRSVQ
LS

Sequences:

>Translated_242_residues
MVWTGAAVIEPGRLVYRGALGDTHRHTHAAVQIAIALDGTLQLTDGADRRVSTRAAVIPAGAQHTVHGGTSTGLMIYLEP
TCFEGRALGALFDNAARDDATAWCAAASELSDIQDDSSSAESVIARLVGDVHASEPHESVREAIRLLPGMLTGPVRLAEV
ARVVHLSADRLGRMFARDTGMSFPAYVRWARLIRTIEVARTGGTLTDAAHAAGFSDSSHANRAFHEMFGITPVELHRSVQ
LS
>Mature_242_residues
MVWTGAAVIEPGRLVYRGALGDTHRHTHAAVQIAIALDGTLQLTDGADRRVSTRAAVIPAGAQHTVHGGTSTGLMIYLEP
TCFEGRALGALFDNAARDDATAWCAAASELSDIQDDSSSAESVIARLVGDVHASEPHESVREAIRLLPGMLTGPVRLAEV
ARVVHLSADRLGRMFARDTGMSFPAYVRWARLIRTIEVARTGGTLTDAAHAAGFSDSSHANRAFHEMFGITPVELHRSVQ
LS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25797; Mature: 25797

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVWTGAAVIEPGRLVYRGALGDTHRHTHAAVQIAIALDGTLQLTDGADRRVSTRAAVIPA
CEECCCEEECCCCEEEECCCCCCCCCHHEEEEEEEEECCEEEECCCCCCCCCCCEEEEEC
GAQHTVHGGTSTGLMIYLEPTCFEGRALGALFDNAARDDATAWCAAASELSDIQDDSSSA
CCCEEECCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHH
ESVIARLVGDVHASEPHESVREAIRLLPGMLTGPVRLAEVARVVHLSADRLGRMFARDTG
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
MSFPAYVRWARLIRTIEVARTGGTLTDAAHAAGFSDSSHANRAFHEMFGITPVELHRSVQ
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHCCCCC
LS
CC
>Mature Secondary Structure
MVWTGAAVIEPGRLVYRGALGDTHRHTHAAVQIAIALDGTLQLTDGADRRVSTRAAVIPA
CEECCCEEECCCCEEEECCCCCCCCCHHEEEEEEEEECCEEEECCCCCCCCCCCEEEEEC
GAQHTVHGGTSTGLMIYLEPTCFEGRALGALFDNAARDDATAWCAAASELSDIQDDSSSA
CCCEEECCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHH
ESVIARLVGDVHASEPHESVREAIRLLPGMLTGPVRLAEVARVVHLSADRLGRMFARDTG
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
MSFPAYVRWARLIRTIEVARTGGTLTDAAHAAGFSDSSHANRAFHEMFGITPVELHRSVQ
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHCCCCC
LS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA