Click here to switch to the map view.

The map label for this gene is dmsD [H]

Identifier: 16767558

GI number: 16767558

Start: 4555731

End: 4556384

Strand: Direct

Name: dmsD [H]

Synonym: STM4308

Alternate gene names: 16767558

Gene position: 4555731-4556384 (Clockwise)

Preceding gene: 16767557

Following gene: 16767560

Centisome position: 93.79

GC content: 53.36

Gene sequence:

>654_bases
ATGCCATGTAAGCCTGATCAGCGTAGCGTCATCAGGCGAAATATTTCAGGAGCTATTGCTATGCTTTCCCGTGCTGTTTT
GCCGCGTATCCTCGGCGCACTGTTTTACTACTCCCCTGAGAGGCCGGAGGTGAAAGCGTTGTTCGATTGTTTGCCAACGT
TGCCTGAGCTTTACCCCTGGCGCGATCGTGGATCTATTGAATCACTGTGTGCGTCATGGTCGCTACCGGATGATGATGCG
CTTACATGGCAATTTTCCGTATTGTTTGAAGGCCAGGGAAAGATGCCCGTCCCGCCCTGGGGATCGGTCTATCTGGAAAA
AGATAATTTGCTGATGGGGGAAACCACCGCCGATTATCGAGCTTTTTTACAGTCGCAGGGCATGGTATTCACTGACCGTG
AACGCGAGCCGGAAGATCAGTTTGGCCTGATGCTATTGGCCTGTAGCGATCTGCTGGCACGAGGCGACAACGTGGCGGCC
AACCGGTTACTGGAGGCGCATCTGCTGCCCTGGGGATTCCGCTATCTGGAATTGCTGCAACGCAATACCGTTAGCGCCTT
CTATGCCCGGCTTGCCGTCGTAGCGACCTGTTATCTGCAGGATGTTCAGCAGCAACAGGGACTACAGCCTGAGAATAAGC
GGTTGTTTTTCTGA

Upstream 100 bases:

>100_bases
GCTGGCCATGACGGCTGTGGTGGTTATCGCGGCGGAGTTGGCGGGTAGGATTGCGTTTTACAATCTGTGGACGCTGCCAA
TGTAGTTTTTTGCCCGGTTT

Downstream 100 bases:

>100_bases
GGTATTGGTCGGGTTTTGATGGCGTGCCGTAATACTTGTGCCGCCATCGTGCCCGCTGTTGCGTCAGCGGGCACAGTTTA
CTATTACAGCTCCGGCGTCT

Product: anaerobic dehydrogenase component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MPCKPDQRSVIRRNISGAIAMLSRAVLPRILGALFYYSPERPEVKALFDCLPTLPELYPWRDRGSIESLCASWSLPDDDA
LTWQFSVLFEGQGKMPVPPWGSVYLEKDNLLMGETTADYRAFLQSQGMVFTDREREPEDQFGLMLLACSDLLARGDNVAA
NRLLEAHLLPWGFRYLELLQRNTVSAFYARLAVVATCYLQDVQQQQGLQPENKRLFF

Sequences:

>Translated_217_residues
MPCKPDQRSVIRRNISGAIAMLSRAVLPRILGALFYYSPERPEVKALFDCLPTLPELYPWRDRGSIESLCASWSLPDDDA
LTWQFSVLFEGQGKMPVPPWGSVYLEKDNLLMGETTADYRAFLQSQGMVFTDREREPEDQFGLMLLACSDLLARGDNVAA
NRLLEAHLLPWGFRYLELLQRNTVSAFYARLAVVATCYLQDVQQQQGLQPENKRLFF
>Mature_216_residues
PCKPDQRSVIRRNISGAIAMLSRAVLPRILGALFYYSPERPEVKALFDCLPTLPELYPWRDRGSIESLCASWSLPDDDAL
TWQFSVLFEGQGKMPVPPWGSVYLEKDNLLMGETTADYRAFLQSQGMVFTDREREPEDQFGLMLLACSDLLARGDNVAAN
RLLEAHLLPWGFRYLELLQRNTVSAFYARLAVVATCYLQDVQQQQGLQPENKRLFF

Specific function: Binds to the twin-arginine signal peptide of dmsA and torA. Could be required for the biogenesis of DMSO reductase rather than for the targeting of dmsA to the inner membrane [H]

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Cytoplasm (By similarity). Note=Mainly cytoplasmic under aerobic conditions, and found in the inner membrane under anaerobic conditions (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081942, Length=200, Percent_Identity=32, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 24772; Mature: 24641

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCKPDQRSVIRRNISGAIAMLSRAVLPRILGALFYYSPERPEVKALFDCLPTLPELYPW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
RDRGSIESLCASWSLPDDDALTWQFSVLFEGQGKMPVPPWGSVYLEKDNLLMGETTADYR
CCCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCEEECCCHHHHH
AFLQSQGMVFTDREREPEDQFGLMLLACSDLLARGDNVAANRLLEAHLLPWGFRYLELLQ
HHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHH
RNTVSAFYARLAVVATCYLQDVQQQQGLQPENKRLFF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PCKPDQRSVIRRNISGAIAMLSRAVLPRILGALFYYSPERPEVKALFDCLPTLPELYPW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
RDRGSIESLCASWSLPDDDALTWQFSVLFEGQGKMPVPPWGSVYLEKDNLLMGETTADYR
CCCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCEEECCCHHHHH
AFLQSQGMVFTDREREPEDQFGLMLLACSDLLARGDNVAANRLLEAHLLPWGFRYLELLQ
HHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHH
RNTVSAFYARLAVVATCYLQDVQQQQGLQPENKRLFF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]