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The map label for this gene is ynfH [H]

Identifier: 16767557

GI number: 16767557

Start: 4554942

End: 4555715

Strand: Direct

Name: ynfH [H]

Synonym: STM4307

Alternate gene names: 16767557

Gene position: 4554942-4555715 (Clockwise)

Preceding gene: 16767556

Following gene: 16767558

Centisome position: 93.77

GC content: 61.5

Gene sequence:

>774_bases
ATGCATGAGTTACCGCTGGTCTTTTTTACGGTCTTTACCCAGAGCGCGGTCGGCGCGTTTATTCTGCTGCTGATTGGCGG
CGCAATGGGGCTGGTCGCGCCGCGGCGTAAGGCTATCGGTCTGTTCTCGGTGATGTGCCTGTTTGGGCTGGGCGTCATTG
TCGGCACCTTCCACGTCGGGCAACCGCTGCGTGCGCTGAATATGCTGCTGCGCGTCGGACATTCGCCGATGAGTAACGAG
ATTGTCCTGTCGGCGGCTTTTGCGGCGCTCGGCGGGCTGGGGGCGCTCGGTTTGTTGCTGAACCGGGCGACGCCGCTGTG
TAACGCGTTGGTCTGGTTGGCGGCGATAGTCGGAGTAGTCTTCTTATACGCCGTTCCGCAGATTTACCAACTGCCGACGG
TGGCGACCTGGCGTTCATCTTACACCACGGCAATGATGATATTGACGCCGTTGATTGGCGGCGGCGCGTTGGCGGCATTG
TTTGGCGTGCGCCGTCTGGGGCTACTGGTCAGCGTGTTGGCGATTTTGGTGAGCTTTTGTCTGCGCCCGGGCTATATGGC
GACGCTGATGAGCGCCGATAGCGCTCTGACCGCCGCGCAGCATAGCTGGTTTACCGCCCAGGCGATATTGCTGGCGGCGG
GCGTGGTCGGGGTGGTGGTCTGCGCGCGCCTGAAATCGAGCGCTGCGGTGCTGGCCATGACGGCTGTGGTGGTTATCGCG
GCGGAGTTGGCGGGTAGGATTGCGTTTTACAATCTGTGGACGCTGCCAATGTAG

Upstream 100 bases:

>100_bases
GCGTCGTTCACCCATCCTAACCTCATTATTAAACCGCATCCGAAAGCGAGACCCACGGGCGATACGGAAGGCGCAATCAT
GAACATTCGGGAGGTGCGCC

Downstream 100 bases:

>100_bases
TTTTTTGCCCGGTTTATGCCATGTAAGCCTGATCAGCGTAGCGTCATCAGGCGAAATATTTCAGGAGCTATTGCTATGCT
TTCCCGTGCTGTTTTGCCGC

Product: anaerobic dimethylsulfoxide reductase subunit C

Products: NA

Alternate protein names: DMSO reductase anchor subunit ynfH [H]

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MHELPLVFFTVFTQSAVGAFILLLIGGAMGLVAPRRKAIGLFSVMCLFGLGVIVGTFHVGQPLRALNMLLRVGHSPMSNE
IVLSAAFAALGGLGALGLLLNRATPLCNALVWLAAIVGVVFLYAVPQIYQLPTVATWRSSYTTAMMILTPLIGGGALAAL
FGVRRLGLLVSVLAILVSFCLRPGYMATLMSADSALTAAQHSWFTAQAILLAAGVVGVVVCARLKSSAAVLAMTAVVVIA
AELAGRIAFYNLWTLPM

Sequences:

>Translated_257_residues
MHELPLVFFTVFTQSAVGAFILLLIGGAMGLVAPRRKAIGLFSVMCLFGLGVIVGTFHVGQPLRALNMLLRVGHSPMSNE
IVLSAAFAALGGLGALGLLLNRATPLCNALVWLAAIVGVVFLYAVPQIYQLPTVATWRSSYTTAMMILTPLIGGGALAAL
FGVRRLGLLVSVLAILVSFCLRPGYMATLMSADSALTAAQHSWFTAQAILLAAGVVGVVVCARLKSSAAVLAMTAVVVIA
AELAGRIAFYNLWTLPM
>Mature_257_residues
MHELPLVFFTVFTQSAVGAFILLLIGGAMGLVAPRRKAIGLFSVMCLFGLGVIVGTFHVGQPLRALNMLLRVGHSPMSNE
IVLSAAFAALGGLGALGLLLNRATPLCNALVWLAAIVGVVFLYAVPQIYQLPTVATWRSSYTTAMMILTPLIGGGALAAL
FGVRRLGLLVSVLAILVSFCLRPGYMATLMSADSALTAAQHSWFTAQAILLAAGVVGVVVCARLKSSAAVLAMTAVVVIA
AELAGRIAFYNLWTLPM

Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds. The C subunit anchors the other two subunits to the membrane and stabilize the catalytic subunits [H]

COG id: COG3302

COG function: function code R; DMSO reductase anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli dmsC [H]

Homologues:

Organism=Escherichia coli, GI1787873, Length=271, Percent_Identity=32.8413284132841, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787123, Length=273, Percent_Identity=32.967032967033, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007059 [H]

Pfam domain/function: PF04976 DmsC [H]

EC number: NA

Molecular weight: Translated: 26856; Mature: 26856

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHEECCCC
>Mature Secondary Structure
MHELPLVFFTVFTQSAVGAFILLLIGGAMGLVAPRRKAIGLFSVMCLFGLGVIVGTFHVG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QPLRALNMLLRVGHSPMSNEIVLSAAFAALGGLGALGLLLNRATPLCNALVWLAAIVGVV
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FLYAVPQIYQLPTVATWRSSYTTAMMILTPLIGGGALAALFGVRRLGLLVSVLAILVSFC
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRPGYMATLMSADSALTAAQHSWFTAQAILLAAGVVGVVVCARLKSSAAVLAMTAVVVIA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELAGRIAFYNLWTLPM
HHHHHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]