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The map label for this gene is pduS [H]

Identifier: 16765383

GI number: 16765383

Start: 2128736

End: 2130091

Strand: Direct

Name: pduS [H]

Synonym: STM2053

Alternate gene names: 16765383

Gene position: 2128736-2130091 (Clockwise)

Preceding gene: 16765382

Following gene: 16765384

Centisome position: 43.82

GC content: 61.43

Gene sequence:

>1356_bases
ATGAGCACCGCCATCAACAGCGTTGAAATGTCCCTTAGCGCCGATGAAATTCGCGAGCGCGTTCGCGCAGCGGGCGTTGT
CGGCGCGGGCGGCGCAGGTTTTCCCGCTCACGTCAAACTACAGGCGCAGGTAGAGATTTTTCTGGTGAACGCCGCCGAAT
GTGAACCGATGCTCAAAGTTGACCAGCAACTGATGTGGCAGCAAGCTGCGCGCCTTGTGCGCGGCGTACAGTACGCCATG
ACGGCAACCGGCGCGCGCGAAGGGGTGATAGCCCTGAAAGAAAAATACCGCCGGGCCATCGACGCCCTCACCCCACTGCT
GCCAGACGGTATCCGCCTGCATATCCTGCCGGATGTATATCCGGCAGGCGATGAGGTGCTGACTATCTGGATGGCAACCG
GTCGTCGGGTCGCCCCGGCTGCGCTACCGGCCAGCGTCGGCGTGGTCGTCAATAACGTGCAAACGGTGCTAAATATTGCC
CGAGCGGTCGAGCAGCGGTTTCCGGTCACTCGTCGCACGTTGACCGTGAACGGCGCGGTCGCCAGACCGTTGACCGTTAC
TGTTCCCATCGGCATGTCGCTGCGGGAAGTACTGGCGCTGGCGGGCGGCGCAACGGTCGACGACCCTGGTTTTATTAACG
GCGGCCCGATGATGGGTGGCCTGATTACCTCTCTTGATAATCCGGTGACGAAAACTACCGGCGGCCTGCTGGTGCTCCCC
AAAAGCCATCCGCTTATCCAGCGGAGAATGCAGGACGAGCGCACGGTGCTTTCCGTCGCGCGCACCGTCTGCGAACAGTG
CCGACTGTGTACCGATCTCTGTCCGCGACACCTGATCGGCCACGAACTCTCTCCGCACCTGCTGGTGCGGGCGGTGAACT
TTCATCAGGCTGCCACGCCGCAGCTGCTGCTGAGCGCCCTTACCTGTTCGGAATGCAACGTTTGCGAAAGCGTGGCCTGT
CCGGTGGGGATCTCGCCGATGCGCATCAACCGCATGTTAAAACGCGAGCTACGGGCGCAAAACCAGCGCTACGAAGGGCC
GCTGAATCCGGCCGACGAGATGGCGAAATATCGCCTCGTGCCGGTGAAGCGGCTGATCGCCAAACTGGGACTAAGCCCCT
GGTACCAGGAAGCGCCGCTGGTTGAAGAAGAACCGTCAGTAGAAAAAGTCACTTTGCAGCTGCGCCAGCATATTGGTGCC
AGCGCGGTAGCGAACGTTGCGGTGGGAGAACGCGTGACGCGCGGGCAATGCGTTGCTGATGTCCCGCCTGGCGCGCTCGG
CGCACCCATTCACGCCAGCATCGACGGCGTTGTATCGGCCATCAGCGAACAGGCCATCACTGTTGTAAGAGGTTAA

Upstream 100 bases:

>100_bases
TTCCGGCGATGGTGCAGGCTGCGCTGGCTGACGTTACGCTGCGCACTAACCCGCGCCCGGCCAATGCCGAAGCCATTCGG
GAACTGCTGGAGGAACTGCT

Downstream 100 bases:

>100_bases
CCATGTCTCAGGCTATAGGAATTTTAGAACTCACCAGCATCGCCAAAGGCATGGAGCTTGGTGATGCCATGCTGAAAAGC
GCCAACGTCGATCTACTGGT

Product: polyhedral body protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MSTAINSVEMSLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAM
TATGAREGVIALKEKYRRAIDALTPLLPDGIRLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIA
RAVEQRFPVTRRTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDPGFINGGPMMGGLITSLDNPVTKTTGGLLVLP
KSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNFHQAATPQLLLSALTCSECNVCESVAC
PVGISPMRINRMLKRELRAQNQRYEGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGA
SAVANVAVGERVTRGQCVADVPPGALGAPIHASIDGVVSAISEQAITVVRG

Sequences:

>Translated_451_residues
MSTAINSVEMSLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAM
TATGAREGVIALKEKYRRAIDALTPLLPDGIRLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIA
RAVEQRFPVTRRTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDPGFINGGPMMGGLITSLDNPVTKTTGGLLVLP
KSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNFHQAATPQLLLSALTCSECNVCESVAC
PVGISPMRINRMLKRELRAQNQRYEGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGA
SAVANVAVGERVTRGQCVADVPPGALGAPIHASIDGVVSAISEQAITVVRG
>Mature_450_residues
STAINSVEMSLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMT
ATGAREGVIALKEKYRRAIDALTPLLPDGIRLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIAR
AVEQRFPVTRRTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDPGFINGGPMMGGLITSLDNPVTKTTGGLLVLPK
SHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNFHQAATPQLLLSALTCSECNVCESVACP
VGISPMRINRMLKRELRAQNQRYEGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGAS
AVANVAVGERVTRGQCVADVPPGALGAPIHASIDGVVSAISEQAITVVRG

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=333, Percent_Identity=33.9339339339339, Blast_Score=158, Evalue=8e-40,
Organism=Escherichia coli, GI1788620, Length=324, Percent_Identity=28.0864197530864, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 48390; Mature: 48259

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAINSVEMSLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKV
CCCCCCHHEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHH
DQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDALTPLLPDGIRLHILPDVY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
PAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIARAVEQRFPVTRRTLTVNGAV
CCCCCEEEEEECCCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
ARPLTVTVPIGMSLREVLALAGGATVDDPGFINGGPMMGGLITSLDNPVTKTTGGLLVLP
CCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEC
KSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNFHQAATP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEHHHHHCCCH
QLLLSALTCSECNVCESVACPVGISPMRINRMLKRELRAQNQRYEGPLNPADEMAKYRLV
HHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
PVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGASAVANVAVGERVTRGQCVAD
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEC
VPPGALGAPIHASIDGVVSAISEQAITVVRG
CCCCCCCCCCHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
STAINSVEMSLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKV
CCCCCHHEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHH
DQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDALTPLLPDGIRLHILPDVY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
PAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIARAVEQRFPVTRRTLTVNGAV
CCCCCEEEEEECCCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
ARPLTVTVPIGMSLREVLALAGGATVDDPGFINGGPMMGGLITSLDNPVTKTTGGLLVLP
CCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEC
KSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNFHQAATP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEHHHHHCCCH
QLLLSALTCSECNVCESVACPVGISPMRINRMLKRELRAQNQRYEGPLNPADEMAKYRLV
HHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
PVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGASAVANVAVGERVTRGQCVAD
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEC
VPPGALGAPIHASIDGVVSAISEQAITVVRG
CCCCCCCCCCHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA