Click here to switch to the map view.

The map label for this gene is yddE

Identifier: 16764925

GI number: 16764925

Start: 1667447

End: 1668340

Strand: Direct

Name: yddE

Synonym: STM1581

Alternate gene names: 16764925

Gene position: 1667447-1668340 (Clockwise)

Preceding gene: 16764924

Following gene: 16764928

Centisome position: 34.33

GC content: 53.47

Gene sequence:

>894_bases
ATGAAACCGCAGATTTACCATGTTGACGCCTTCACCGGCGACCCCTTTCGCGGCAACTCTGCTGGCGTTGTCTTACATGC
GGATACGCTAAGCGACGCGCAGATGCAGCTGATTGCCCGTGAACTTCGTCACTCGGAAACCGCCTTTTTGCTAAAAAGCG
AAGAGAGTGATGTGCGCATACGCTACTTTACACCGACAGTAGAAGTCCCCATCTGTGGTCATGCCACCGTGGCCGCGCAT
TATGTTCGGGCAACGGTACTGGGGTTGGGAAACACCACCGTCTGGCAAACCTCGTTAGCGGGCCGTCATCGCGTTGAAAT
TCATGCCGAACACAACGACTATCGCATCACGCTGGAACAAGGTCAGCCCTCTTTTGAACCACCGCTAGTCGGAGAGATTC
GGGCTGCCATCATCACCGCACTGAACCTGACTGAAGATGATATCGTGCCGGGAGCGCCAATTCAGGTGGCTTCAACAGGA
CATGCAAAAGTGATGATCCTGCTCAAACCAGACGTTGATATTGATGCCCTTTCTCCTAATCTGGCAGCCCTGACGGCAAT
CAGCCAGCAAATTGGCTGTAACGGCTTTTTTCCTTTCCAGATTCGTCCGGGAAAAAACGAAACCGATGGGCGAATGTTTT
CCCCGGCGATAGGAATTGTGGAAGATCCGGTAACGGGAAACGCCAATGGCCCGATGGGGGCATGGCTCGTCCATCATGGC
CTGATGGCGCATGACGGTAAAACGCTGCAGATTCAAGGCCATCAGGGGCGCGCTTTAGGCAAAGAGGGTACTGTTGATGT
TACCGTCACCATTCGCGATAACCAGCCGGAAAACGTCACCATCTCCGGCCAGGCGGTCATTCTGTTTCATGCCGAATGGG
CCATTACTTTTTAA

Upstream 100 bases:

>100_bases
TTTGCCCGGGGATACGCTTACCGGGCAAAGAAAAACGCCTGGGCGTCGTCATTCGGCAACGCACAGGCTATGATGATTCT
TCAGTCAAAGGAGAACATCA

Downstream 100 bases:

>100_bases
TCTTTGTCAGGCCCGCAAATCCTCGCGGCAAAAAATTATTTTCCCGCCTCTGGATGGGTATCAAATGCAGCCATTACCGC
GGCCAGCTCCGCCTCGGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKPQIYHVDAFTGDPFRGNSAGVVLHADTLSDAQMQLIARELRHSETAFLLKSEESDVRIRYFTPTVEVPICGHATVAAH
YVRATVLGLGNTTVWQTSLAGRHRVEIHAEHNDYRITLEQGQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTG
HAKVMILLKPDVDIDALSPNLAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHG
LMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQPENVTISGQAVILFHAEWAITF

Sequences:

>Translated_297_residues
MKPQIYHVDAFTGDPFRGNSAGVVLHADTLSDAQMQLIARELRHSETAFLLKSEESDVRIRYFTPTVEVPICGHATVAAH
YVRATVLGLGNTTVWQTSLAGRHRVEIHAEHNDYRITLEQGQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTG
HAKVMILLKPDVDIDALSPNLAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHG
LMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQPENVTISGQAVILFHAEWAITF
>Mature_297_residues
MKPQIYHVDAFTGDPFRGNSAGVVLHADTLSDAQMQLIARELRHSETAFLLKSEESDVRIRYFTPTVEVPICGHATVAAH
YVRATVLGLGNTTVWQTSLAGRHRVEIHAEHNDYRITLEQGQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTG
HAKVMILLKPDVDIDALSPNLAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHG
LMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQPENVTISGQAVILFHAEWAITF

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family

Homologues:

Organism=Homo sapiens, GI62177133, Length=289, Percent_Identity=32.1799307958478, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI74316009, Length=270, Percent_Identity=32.5925925925926, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI1787737, Length=295, Percent_Identity=81.6949152542373, Blast_Score=508, Evalue=1e-145,
Organism=Saccharomyces cerevisiae, GI6321818, Length=294, Percent_Identity=27.2108843537415, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDDE_SALTY (P40788)

Other databases:

- EMBL:   AE006468
- EMBL:   D90301
- RefSeq:   NP_460540.1
- ProteinModelPortal:   P40788
- SMR:   P40788
- PRIDE:   P40788
- GeneID:   1253099
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1581
- NMPDR:   fig|99287.1.peg.1530
- HOGENOM:   HBG563743
- OMA:   KEFTGSK
- ProtClustDB:   PRK10281
- BioCyc:   STYP99287:STM1581-MONOMER
- InterPro:   IPR003719
- PANTHER:   PTHR13774
- PIRSF:   PIRSF016184
- TIGRFAMs:   TIGR00654

Pfam domain/function: PF02567 PhzC-PhzF

EC number: NA

Molecular weight: Translated: 32152; Mature: 32152

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: ACT_SITE 46-46

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPQIYHVDAFTGDPFRGNSAGVVLHADTLSDAQMQLIARELRHSETAFLLKSEESDVRI
CCCEEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEE
RYFTPTVEVPICGHATVAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHAEHNDYRITLEQ
EEECCEEEEEECCCHHHHHHEEEEEEEECCCCEEEEECCCCCEEEEEEEECCCEEEEEEC
GQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMILLKPDVDIDALSPN
CCCCCCCCCHHHHHEEEEEEECCCHHCCCCCCCEEEEECCCEEEEEEECCCCCEECCCCC
LAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHG
HHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCEEECCCCCCCCCCCHHHHHHCC
LMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQPENVTISGQAVILFHAEWAITF
EEECCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECCCEEEEEEEEEEEEC
>Mature Secondary Structure
MKPQIYHVDAFTGDPFRGNSAGVVLHADTLSDAQMQLIARELRHSETAFLLKSEESDVRI
CCCEEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEE
RYFTPTVEVPICGHATVAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHAEHNDYRITLEQ
EEECCEEEEEECCCHHHHHHEEEEEEEECCCCEEEEECCCCCEEEEEEEECCCEEEEEEC
GQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMILLKPDVDIDALSPN
CCCCCCCCCHHHHHEEEEEEECCCHHCCCCCCCEEEEECCCEEEEEEECCCCCEECCCCC
LAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHG
HHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCEEECCCCCCCCCCCHHHHHHCC
LMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQPENVTISGQAVILFHAEWAITF
EEECCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 1569093