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The map label for this gene is sseE

Identifier: 16764752

GI number: 16764752

Start: 1487057

End: 1487473

Strand: Direct

Name: sseE

Synonym: STM1402

Alternate gene names: NA

Gene position: 1487057-1487473 (Clockwise)

Preceding gene: 16764751

Following gene: 16764753

Centisome position: 30.61

GC content: 45.08

Gene sequence:

>417_bases
ATGGTGCAAGAAATAGAGCAATGGTTACGTCGGCATCAGGTGTTTACTGAGCCTGCATATTTAGGGGAGACCGCCATATT
ACTTGGGCAGCAGTTTATATTATCGCCTTACCTGGTGATCTATCGTATTGAGGCAAAAGAAATGATTATTTGTGAGTTCA
GGCGCCTGACGCCCGGGCAACCTCGACCACAGCAATTGTTTCACTTACTGGGACTTTTACGCGGGATATTTGTGCATCAC
CCGCAGTTAACATGTTTAAAGATGTTGATAATCACCGACGTTCTGGATGAAAAAAAAGCCATGCTACGCAGGAAATTATT
GCGCATCCTGACAGTAATGGGAGCGACCTTTACACAGCTTGATGGCGATAACTGGACAGTTTTATCCGCCGAGCATCTTA
TCCAGCGACGTTTTTAA

Upstream 100 bases:

>100_bases
TTATGGAGAAAGCAACTGAAATTATGCAGCAAATCATCGGCGTGGGGTCGTCACTGGTCACGGTTCTTGCTGAAATACTC
CGGGCATTAACGAGGTAAAC

Downstream 100 bases:

>100_bases
ATGACCTTCCTGACGTAAATCATTATCACGTGAAAATAACAATCAATAGGTATGATGATGAAAGAAGATCAGAAAAATAA
AATACCCGAAGACATTCTGA

Product: secreted effector protein

Products: NA

Alternate protein names: Pathogenicity Island Effector Protein; Secreted Effector Protein

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIEAKEMIICEFRRLTPGQPRPQQLFHLLGLLRGIFVHH
PQLTCLKMLIITDVLDEKKAMLRRKLLRILTVMGATFTQLDGDNWTVLSAEHLIQRRF

Sequences:

>Translated_138_residues
MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIEAKEMIICEFRRLTPGQPRPQQLFHLLGLLRGIFVHH
PQLTCLKMLIITDVLDEKKAMLRRKLLRILTVMGATFTQLDGDNWTVLSAEHLIQRRF
>Mature_138_residues
MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIEAKEMIICEFRRLTPGQPRPQQLFHLLGLLRGIFVHH
PQLTCLKMLIITDVLDEKKAMLRRKLLRILTVMGATFTQLDGDNWTVLSAEHLIQRRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16267; Mature: 16267

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIEAKEMIICEFRRLTPGQ
CHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHCHHHEEEEECCHHHHHHHHHHCCCCC
PRPQQLFHLLGLLRGIFVHHPQLTCLKMLIITDVLDEKKAMLRRKLLRILTVMGATFTQL
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE
DGDNWTVLSAEHLIQRRF
CCCCEEEEEHHHHHHHCC
>Mature Secondary Structure
MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIEAKEMIICEFRRLTPGQ
CHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHCHHHEEEEECCHHHHHHHHHHCCCCC
PRPQQLFHLLGLLRGIFVHHPQLTCLKMLIITDVLDEKKAMLRRKLLRILTVMGATFTQL
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE
DGDNWTVLSAEHLIQRRF
CCCCEEEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA