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The map label for this gene is sscB

Identifier: 16764753

GI number: 16764753

Start: 1487525

End: 1487959

Strand: Direct

Name: sscB

Synonym: STM1403

Alternate gene names: NA

Gene position: 1487525-1487959 (Clockwise)

Preceding gene: 16764752

Following gene: 16764754

Centisome position: 30.62

GC content: 47.59

Gene sequence:

>435_bases
ATGATGATGAAAGAAGATCAGAAAAATAAAATACCCGAAGACATTCTGAAACAGCTATTATCCGTTGATCCGGAAACCGT
TTATGCCAGTGGTTACGCCTCATGGCAGGAGGGGGATTATTCGCGCGCCGTAATCGATTTTAGTTGGCTGGTGATGGCCC
AGCCATGGAGTTGGCGTGCCCATATTGCATTGGCTGGCACCTGGATGATGCTTAAAGAATACACGACGGCCATTAATTTC
TATGGACATGCCTTGATGCTGGATGCCAGCCATCCAGAACCGGTTTACCAAACGGGCGTCTGTCTCAAAATGATGGGGGA
ACCCGGGTTGGCGAGAGAGGCTTTTCAAACCGCAATCAAGATGAGTTATGCGGATGCCTCATGGAGTGAGATTCGCCAGA
ATGCGCAAATAATGGTTGATACTCTTATTGCTTAA

Upstream 100 bases:

>100_bases
TAACTGGACAGTTTTATCCGCCGAGCATCTTATCCAGCGACGTTTTTAAATGACCTTCCTGACGTAAATCATTATCACGT
GAAAATAACAATCAATAGGT

Downstream 100 bases:

>100_bases
ATAACAGAACGAAATATGAAAATTCATATTCCGTCAGCGGCAAGTAATATAGTCGATGGTAATAGTCCTCCTTCCGATAT
ACAAGCGAAGGAGGTATCGT

Product: secretion system chaperone

Products: NA

Alternate protein names: Type III Secretion Low Calcium Response Chaperone LcrH/SycD; Pathogenicity Island Protein

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF
YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTLIA

Sequences:

>Translated_144_residues
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF
YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTLIA
>Mature_144_residues
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF
YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTLIA

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16375; Mature: 16375

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
7.6 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
7.6 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA
CCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCEE
HIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK
EEEEHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHCCEEEECCCCCCHHHHHHHHHH
MSYADASWSEIRQNAQIMVDTLIA
HHCCCCCHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA
CCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCEE
HIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK
EEEEHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHCCEEEECCCCCCHHHHHHHHHH
MSYADASWSEIRQNAQIMVDTLIA
HHCCCCCHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA