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The map label for this gene is stfD [H]

Identifier: 16763587

GI number: 16763587

Start: 233978

End: 234730

Strand: Direct

Name: stfD [H]

Synonym: STM0197

Alternate gene names: 16763587

Gene position: 233978-234730 (Clockwise)

Preceding gene: 16763586

Following gene: 16763588

Centisome position: 4.82

GC content: 54.18

Gene sequence:

>753_bases
ATGATGTCATTAAAACGTTATAACCTGGCCGCTGTTTTGCTGCTTTTGCTGGGCGGCTACGGTAGCGCCCAGGCCGCCAT
CGCGCCCGATCGCACCCGCCTGGTGTTTCGCGGCGAAGATAAATCGATAAGCGTCGATCTGAAAAACGCCAACAGCAAAC
TGCCCTATCTGGCGCAGTCCTGGGTGGAAGATGAGAAGGGCGTCAAAATCACCTCGCCTTTAATCGTCGTCCCACCGGTC
CAGCGCATTGAGCCGTCGGCAATCGGACAGGTCAAAATTCAGGGGATGCCGGCGCTGGCGTCGCTCCCCCAGGATCGGGA
AACCCTTTTTTATTACAACGTGCGCGAAATTCCGCCGCAAAGCGACAAGCCCAATACGCTGCAAATCGCCCTGCAAACGC
GCATCAAAGTTTTTTACCGCCCGCAGGCGCTATCGAAAATCGATATGCAGCATCCCTGGCAATACAAGATCACCCTTCAG
CGTCAGGGCAATGGCTATCAGGTGAGCAACACAACCGGCTACTACGTGGTGTTAAGCAACGCCAGCAACCGCATGGACGG
CACACCAGCCAGAGGCTTTAGCCCTTTAGTGATTGCACCAAAAAGCAACGTGACGCTGGGAGGGGACGCCAGTGAATTAG
GTCACTCGCCTGTGCTGACTTACGTCAACGATTATGGCGCGCGGTTACCGCTGATTTTTAACTGTACTGACAACAGTTGT
GCGGTAGATGAAGCAAAAAGCAGAAAGTCGTAA

Upstream 100 bases:

>100_bases
AACCATTACTCCAGCTTCATACGCAGCGGCGGACGTCTTCGACGCAACCCGAAGCGCTCTCTTCTCGTTATCCAACACAT
TGATTCAGGAAACCGCATTC

Downstream 100 bases:

>100_bases
CCGACAAGGAGACGCAAGATGAGGCAATGGCGGTTACGGCTGGGCACGGTAACGTGTGCGGCCATGCTGAGTGCGGTCAG
TATGCCGCTGGCAGCGGGAA

Product: periplasmic fimbrial chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MMSLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPV
QRIEPSAIGQVKIQGMPALASLPQDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQ
RQGNGYQVSNTTGYYVVLSNASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPVLTYVNDYGARLPLIFNCTDNSC
AVDEAKSRKS

Sequences:

>Translated_250_residues
MMSLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPV
QRIEPSAIGQVKIQGMPALASLPQDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQ
RQGNGYQVSNTTGYYVVLSNASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPVLTYVNDYGARLPLIFNCTDNSC
AVDEAKSRKS
>Mature_250_residues
MMSLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPV
QRIEPSAIGQVKIQGMPALASLPQDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQ
RQGNGYQVSNTTGYYVVLSNASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPVLTYVNDYGARLPLIFNCTDNSC
AVDEAKSRKS

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788677, Length=223, Percent_Identity=63.677130044843, Blast_Score=305, Evalue=2e-84,
Organism=Escherichia coli, GI1786936, Length=226, Percent_Identity=41.1504424778761, Blast_Score=170, Evalue=8e-44,
Organism=Escherichia coli, GI87082203, Length=252, Percent_Identity=34.5238095238095, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1789532, Length=225, Percent_Identity=33.7777777777778, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788428, Length=222, Percent_Identity=30.6306306306306, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787171, Length=230, Percent_Identity=30, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1786333, Length=199, Percent_Identity=32.6633165829146, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790771, Length=230, Percent_Identity=32.1739130434783, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1786743, Length=241, Percent_Identity=30.2904564315353, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27556; Mature: 27556

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQS
CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCCEEEEEEECCCCCCCHHHHH
WVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQDRETLFYYNVREIPPQ
HCCCCCCEEEECCEEEECCHHHCCCCCCCEEEEECCCHHHCCCCCCCEEEEEEEEECCCC
SDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQRQGNGYQVSNTTGYYVVLSN
CCCCCEEEEEEEEEEEEEECCCHHHHCCCCCCEEEEEEEEECCCCEEEECCCEEEEEEEC
ASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPVLTYVNDYGARLPLIFNCTDNSC
CCCCCCCCCCCCCCCEEEECCCCEEECCCHHHHCCCCEEEEECCCCCCCCEEEEECCCCC
AVDEAKSRKS
CCCCHHCCCC
>Mature Secondary Structure
MMSLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQS
CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCCEEEEEEECCCCCCCHHHHH
WVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQDRETLFYYNVREIPPQ
HCCCCCCEEEECCEEEECCHHHCCCCCCCEEEEECCCHHHCCCCCCCEEEEEEEEECCCC
SDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQRQGNGYQVSNTTGYYVVLSN
CCCCCEEEEEEEEEEEEEECCCHHHHCCCCCCEEEEEEEEECCCCEEEECCCEEEEEEEC
ASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPVLTYVNDYGARLPLIFNCTDNSC
CCCCCCCCCCCCCCCEEEECCCCEEECCCHHHHCCCCEEEEECCCCCCCCEEEEECCCCC
AVDEAKSRKS
CCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]