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The map label for this gene is stfC [H]

Identifier: 16763586

GI number: 16763586

Start: 231303

End: 233960

Strand: Direct

Name: stfC [H]

Synonym: STM0196

Alternate gene names: 16763586

Gene position: 231303-233960 (Clockwise)

Preceding gene: 16763585

Following gene: 16763587

Centisome position: 4.76

GC content: 54.97

Gene sequence:

>2658_bases
ATGGCTCACTATAAAAAATTTCGTCTGAGCACGCTTGCGGCCGTGGTGGGTATTGTTCTGGCTGTCGGTCCGGAAAATAG
CTACGCGGAAGCGCCCATTCAATTTAATACCCGATTTCTTGATGTTAAAGATGATGCCAGCCTGGATCTCTCCCGTTTTT
CCCGTAAAGGCTACATTATGCCGGGGAGCTATCATCTCCAGGTGCTGGTCAATCAGAGTCAAATTGTCCAGGATAATGTT
ATTACGTATTCCGTTGATAATAACGATCCTGATAACACCTATCCCTGTTTATCGCCTGAACTGGTCTCGCTGCTGGGGTT
AAAACCTGAAATAGCAGATAAAATGATCTGGATAAATGCCGGTCAGTGTCTGCAACCAGATCAACTGGAAGGGATGGAAA
CCCAAACGGATTTAAGCCAGTCAACGCTGACGGTGATTATTCCGCAGGCGTATCTGGAATACAGCGATGAAGAGTGGGAT
CCACCTTCCCGCTGGGATGAAGGGATTCCCGGCGTATTATTTGACTACAACGTTAACAGCCAGTGGCGACATGCTGAACA
TGATGACGGCGATGAATATGACATCAGCGGCAACGGCACGGTGGGTGCCAACCTCGGCGCGTGGCGTTTGCGCGCGGACT
GGCAGGCTAACTATCGTCACGAAAATGACAGCGAAGATAAAGACAACTTTGGCTCCAGTTCCGAACAGAACTGGGACTGG
AACCGCTATTACGCCTGGCGGGCGATCCCGCAGCTCCGGGCGCAGCTAACGCTGGGCGAAGGATCGCTGGAATCCGATAT
TTTCGACGGCTTTAACTATGTTGGCGGCAGCCTTATCACCGACGATCAGATGTTACCGCCTAATCTGCGCGGCTACGCCC
CGGATATATCAGGCGTGGCGCGCACCAACGCCAAAGTCACCGTGACCCAGCGCGGGCGGGTGATTTATGAGTCGCAGGTC
CCGGCTGGGCCGTTTCGCATTCAGGATATTAATGAAACGGTATCCGGCGATCTACACGTCAAAATTGAAGAACAAAGCGG
TCAGGTGCAGGAATATGACGTCAGCACCGCCTCCATTCCGTTTCTGACCCGTCCCGGCCAGGTGCGCTACAAGTTGGCAG
CCGGGCGACCGCAGGACTGGGATCACAATATGGAAGGCGGCTTTTTCACCTCAGCCGAAGCCTCCTGGGGGATCGCTAAC
GGCTGGTCGCTGTACGGCGGTGCCATCGGTGAGCAGGATTATCAGGCGCTGGCGTTAGGACTGGGGCGCGATCTGGCGCT
GCTGGGCGCGTTTTCCGTCGATGTCACCCATTCCCGTGCGACGCTGCCAGAGGGTAGCGCCTACGGCGACGGCACCATTC
AGGGTAACTCGTTCCGTGCCAGCTACGCTAAAGATTTTGATGATATAGACAGCCGTCTGACGTTTGCTGGTTATCGCTTT
TCCGAAGAAAACTACATGACGATGGACGAGTTTATCGATACGCATAATGACGATAACGATCGTCAGCGCACCGGCCACGA
TAAAGAGATGTATACCCTGACGTACAGCCAGAACTTTTCGGCAATAAACGTCAACGCCTATATCAACTACACCCATCGCA
CCTACTGGAATCAACCTAACCAGGACAGCTATAACCTGACGCTGTCGCACTATTTCGATGTCGGTGAGGTGCGCGGGATC
AGTCTGTCGGTGAACGGTTTTCGCAACGAATATGACAATGAGCGTGATGACGGCGTGTACGTCTCGCTCAGTATTCCGTG
GGGCAACAACCGCACGCTGAGCTACAACGGCTCCTTTAGCGATGACAACAACAGCAATCAGGTCGGCTATTACGAGCGCA
TTGACGATCGCAATAACTACCAGATCAACGCTGGTCGCGCGGATAACGGTGCGACTCTCGACGGCTACTACCGTTATCAA
GCGAGCTATGCCGACATTGACGTCAGTGCGAACTATCAGGAAGGCGACTATACCTCCGGCGGACTGAACATCCAGGGCGG
CGCGACGCTGACTGCTAAAGGCGGGGCGTTGCACCGCACCAGCGTCAACGGCGGCTCGCGGCTGCTGGTGGATGTCGGCG
ATGAAGCGAACGTACCCATCTCCGGCTACAGCACGCCGGTATATACCAACGCGTTTGGTAAAGCCGTCATTGTCGACGTC
AACGACTACTACCGCAACCAGGTGAAAATCGACATTACCCAGTTGCCGGAAGACGCGGAAGCAATCCTCTCCATCGCTCA
GGCGACCCTGACGGAAGGGGCGATCGGTTATCGCCGCATGGAGGTGCTCAGCGGTAAAAAAGCCATGGCCAGTATCCGCC
TGCGCGATGGCGGCACGCCGCCCTTCGGCGCAGAGGTTTACAACAGTCGCCAGCAACAGTTAGGGATCGTAGGTGAAGAC
GGCAGCGTTTATCTGATCGGCATTAACCCCGGCGAGCGGTTGCAGGTGACATGGGAAGGTAAAACGCAGTGTGAAGCGAC
GTTGCCCGATCCGCTGCCGGGCGATCTGTTTAGCGGCCTGTTGCTGCCGTGCATCGGCGACGCTTCATCACCTGAGGCAA
CGCAGCCCGAAGAGAAACCATTACTCCAGCTTCATACGCAGCGGCGGACGTCTTCGACGCAACCCGAAGCGCTCTCTTCT
CGTTATCCAACACATTGA

Upstream 100 bases:

>100_bases
ATCAGCTATCTGTAAGTGAAATATCATCCTGCGGCAGTCTGCCGCAGGATGATGCTCAAAGTAAAAAAATAGATTATATA
TTTCAGGGATAGATTGTCTG

Downstream 100 bases:

>100_bases
TTCAGGAAACCGCATTCATGATGTCATTAAAACGTTATAACCTGGCCGCTGTTTTGCTGCTTTTGCTGGGCGGCTACGGT
AGCGCCCAGGCCGCCATCGC

Product: fimbrial outer membrane usher

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 885; Mature: 884

Protein sequence:

>885_residues
MAHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKDDASLDLSRFSRKGYIMPGSYHLQVLVNQSQIVQDNV
ITYSVDNNDPDNTYPCLSPELVSLLGLKPEIADKMIWINAGQCLQPDQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWD
PPSRWDEGIPGVLFDYNVNSQWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANYRHENDSEDKDNFGSSSEQNWDW
NRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGGSLITDDQMLPPNLRGYAPDISGVARTNAKVTVTQRGRVIYESQV
PAGPFRIQDINETVSGDLHVKIEEQSGQVQEYDVSTASIPFLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSAEASWGIAN
GWSLYGGAIGEQDYQALALGLGRDLALLGAFSVDVTHSRATLPEGSAYGDGTIQGNSFRASYAKDFDDIDSRLTFAGYRF
SEENYMTMDEFIDTHNDDNDRQRTGHDKEMYTLTYSQNFSAINVNAYINYTHRTYWNQPNQDSYNLTLSHYFDVGEVRGI
SLSVNGFRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFSDDNNSNQVGYYERIDDRNNYQINAGRADNGATLDGYYRYQ
ASYADIDVSANYQEGDYTSGGLNIQGGATLTAKGGALHRTSVNGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDV
NDYYRNQVKIDITQLPEDAEAILSIAQATLTEGAIGYRRMEVLSGKKAMASIRLRDGGTPPFGAEVYNSRQQQLGIVGED
GSVYLIGINPGERLQVTWEGKTQCEATLPDPLPGDLFSGLLLPCIGDASSPEATQPEEKPLLQLHTQRRTSSTQPEALSS
RYPTH

Sequences:

>Translated_885_residues
MAHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKDDASLDLSRFSRKGYIMPGSYHLQVLVNQSQIVQDNV
ITYSVDNNDPDNTYPCLSPELVSLLGLKPEIADKMIWINAGQCLQPDQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWD
PPSRWDEGIPGVLFDYNVNSQWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANYRHENDSEDKDNFGSSSEQNWDW
NRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGGSLITDDQMLPPNLRGYAPDISGVARTNAKVTVTQRGRVIYESQV
PAGPFRIQDINETVSGDLHVKIEEQSGQVQEYDVSTASIPFLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSAEASWGIAN
GWSLYGGAIGEQDYQALALGLGRDLALLGAFSVDVTHSRATLPEGSAYGDGTIQGNSFRASYAKDFDDIDSRLTFAGYRF
SEENYMTMDEFIDTHNDDNDRQRTGHDKEMYTLTYSQNFSAINVNAYINYTHRTYWNQPNQDSYNLTLSHYFDVGEVRGI
SLSVNGFRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFSDDNNSNQVGYYERIDDRNNYQINAGRADNGATLDGYYRYQ
ASYADIDVSANYQEGDYTSGGLNIQGGATLTAKGGALHRTSVNGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDV
NDYYRNQVKIDITQLPEDAEAILSIAQATLTEGAIGYRRMEVLSGKKAMASIRLRDGGTPPFGAEVYNSRQQQLGIVGED
GSVYLIGINPGERLQVTWEGKTQCEATLPDPLPGDLFSGLLLPCIGDASSPEATQPEEKPLLQLHTQRRTSSTQPEALSS
RYPTH
>Mature_884_residues
AHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKDDASLDLSRFSRKGYIMPGSYHLQVLVNQSQIVQDNVI
TYSVDNNDPDNTYPCLSPELVSLLGLKPEIADKMIWINAGQCLQPDQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWDP
PSRWDEGIPGVLFDYNVNSQWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANYRHENDSEDKDNFGSSSEQNWDWN
RYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGGSLITDDQMLPPNLRGYAPDISGVARTNAKVTVTQRGRVIYESQVP
AGPFRIQDINETVSGDLHVKIEEQSGQVQEYDVSTASIPFLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSAEASWGIANG
WSLYGGAIGEQDYQALALGLGRDLALLGAFSVDVTHSRATLPEGSAYGDGTIQGNSFRASYAKDFDDIDSRLTFAGYRFS
EENYMTMDEFIDTHNDDNDRQRTGHDKEMYTLTYSQNFSAINVNAYINYTHRTYWNQPNQDSYNLTLSHYFDVGEVRGIS
LSVNGFRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFSDDNNSNQVGYYERIDDRNNYQINAGRADNGATLDGYYRYQA
SYADIDVSANYQEGDYTSGGLNIQGGATLTAKGGALHRTSVNGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDVN
DYYRNQVKIDITQLPEDAEAILSIAQATLTEGAIGYRRMEVLSGKKAMASIRLRDGGTPPFGAEVYNSRQQQLGIVGEDG
SVYLIGINPGERLQVTWEGKTQCEATLPDPLPGDLFSGLLLPCIGDASSPEATQPEEKPLLQLHTQRRTSSTQPEALSSR
YPTH

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=844, Percent_Identity=36.9668246445498, Blast_Score=500, Evalue=1e-142,
Organism=Escherichia coli, GI1790772, Length=886, Percent_Identity=28.6681715575621, Blast_Score=305, Evalue=1e-83,
Organism=Escherichia coli, GI1786744, Length=857, Percent_Identity=29.6382730455076, Blast_Score=282, Evalue=7e-77,
Organism=Escherichia coli, GI1786332, Length=864, Percent_Identity=28.125, Blast_Score=277, Evalue=3e-75,
Organism=Escherichia coli, GI1789533, Length=853, Percent_Identity=27.6670574443142, Blast_Score=261, Evalue=2e-70,
Organism=Escherichia coli, GI1787172, Length=834, Percent_Identity=27.3381294964029, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI1788427, Length=836, Percent_Identity=25.7177033492823, Blast_Score=209, Evalue=7e-55,
Organism=Escherichia coli, GI1789610, Length=803, Percent_Identity=24.4084682440847, Blast_Score=132, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 98247; Mature: 98115

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS00489 RNA_POL_PHAGE_2 ; PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKDDASLDLSRFSRKGYIM
CCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCEEECEEEEEECCCCCCCHHHHCCCCEEC
PGSYHLQVLVNQSQIVQDNVITYSVDNNDPDNTYPCLSPELVSLLGLKPEIADKMIWINA
CCCEEEEEEECCCCEEECCEEEEEECCCCCCCCCCCCCHHHHHHHCCCHHHCCEEEEEEC
GQCLQPDQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWDPPSRWDEGIPGVLFDYNVNS
CCCCCCHHCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCHHHCCCCCEEEEECCCC
QWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANYRHENDSEDKDNFGSSSEQNWDW
CCCCCCCCCCCEEEECCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
NRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGGSLITDDQMLPPNLRGYAPDISGVA
CEEEEEEECCHHEEEEEECCCCCCHHHHHCHHHCCCEEEECCCCCCCCCCCCCCCCCCCE
RTNAKVTVTQRGRVIYESQVPAGPFRIQDINETVSGDLHVKIEEQSGQVQEYDVSTASIP
ECCCEEEEEECCEEEEECCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEECCCCCCC
FLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSAEASWGIANGWSLYGGAIGEQDYQALALG
EEECCCCEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCHHHHHHH
LGRDLALLGAFSVDVTHSRATLPEGSAYGDGTIQGNSFRASYAKDFDDIDSRLTFAGYRF
CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEECCCEECHHHCCHHHHHCEEEEEEEEE
SEENYMTMDEFIDTHNDDNDRQRTGHDKEMYTLTYSQNFSAINVNAYINYTHRTYWNQPN
CCCCCEEHHHHHHCCCCCCCHHHCCCCCEEEEEEEECCCCEEEEEEEEEEEEEEECCCCC
QDSYNLTLSHYFDVGEVRGISLSVNGFRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFS
CCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCC
DDNNSNQVGYYERIDDRNNYQINAGRADNGATLDGYYRYQASYADIDVSANYQEGDYTSG
CCCCCCCCCEEEECCCCCCEEEECCCCCCCCEECEEEEEEEEEEEEEEECCCCCCCCCCC
GLNIQGGATLTAKGGALHRTSVNGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDV
CEEECCCEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEC
NDYYRNQVKIDITQLPEDAEAILSIAQATLTEGAIGYRRMEVLSGKKAMASIRLRDGGTP
HHHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEEECCCCC
PFGAEVYNSRQQQLGIVGEDGSVYLIGINPGERLQVTWEGKTQCEATLPDPLPGDLFSGL
CCCHHHHCCHHHHCCEEECCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCHHHHHHH
LLPCIGDASSPEATQPEEKPLLQLHTQRRTSSTQPEALSSRYPTH
HHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCC
>Mature Secondary Structure 
AHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKDDASLDLSRFSRKGYIM
CCCHHHHHHHHHHHHHEEEEECCCCCCCCCCEEECEEEEEECCCCCCCHHHHCCCCEEC
PGSYHLQVLVNQSQIVQDNVITYSVDNNDPDNTYPCLSPELVSLLGLKPEIADKMIWINA
CCCEEEEEEECCCCEEECCEEEEEECCCCCCCCCCCCCHHHHHHHCCCHHHCCEEEEEEC
GQCLQPDQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWDPPSRWDEGIPGVLFDYNVNS
CCCCCCHHCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCHHHCCCCCEEEEECCCC
QWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANYRHENDSEDKDNFGSSSEQNWDW
CCCCCCCCCCCEEEECCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
NRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGGSLITDDQMLPPNLRGYAPDISGVA
CEEEEEEECCHHEEEEEECCCCCCHHHHHCHHHCCCEEEECCCCCCCCCCCCCCCCCCCE
RTNAKVTVTQRGRVIYESQVPAGPFRIQDINETVSGDLHVKIEEQSGQVQEYDVSTASIP
ECCCEEEEEECCEEEEECCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEECCCCCCC
FLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSAEASWGIANGWSLYGGAIGEQDYQALALG
EEECCCCEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCHHHHHHH
LGRDLALLGAFSVDVTHSRATLPEGSAYGDGTIQGNSFRASYAKDFDDIDSRLTFAGYRF
CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEECCCEECHHHCCHHHHHCEEEEEEEEE
SEENYMTMDEFIDTHNDDNDRQRTGHDKEMYTLTYSQNFSAINVNAYINYTHRTYWNQPN
CCCCCEEHHHHHHCCCCCCCHHHCCCCCEEEEEEEECCCCEEEEEEEEEEEEEEECCCCC
QDSYNLTLSHYFDVGEVRGISLSVNGFRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFS
CCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCC
DDNNSNQVGYYERIDDRNNYQINAGRADNGATLDGYYRYQASYADIDVSANYQEGDYTSG
CCCCCCCCCEEEECCCCCCEEEECCCCCCCCEECEEEEEEEEEEEEEEECCCCCCCCCCC
GLNIQGGATLTAKGGALHRTSVNGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDV
CEEECCCEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEC
NDYYRNQVKIDITQLPEDAEAILSIAQATLTEGAIGYRRMEVLSGKKAMASIRLRDGGTP
HHHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEEECCCCC
PFGAEVYNSRQQQLGIVGEDGSVYLIGINPGERLQVTWEGKTQCEATLPDPLPGDLFSGL
CCCHHHHCCHHHHCCEEECCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCHHHHHHH
LLPCIGDASSPEATQPEEKPLLQLHTQRRTSSTQPEALSSRYPTH
HHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]