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The map label for this gene is ccmF [H]

Identifier: 167626006

GI number: 167626006

Start: 5002723

End: 5004702

Strand: Reverse

Name: ccmF [H]

Synonym: Shal_4101

Alternate gene names: 167626006

Gene position: 5004702-5002723 (Counterclockwise)

Preceding gene: 167626008

Following gene: 167626005

Centisome position: 95.75

GC content: 46.11

Gene sequence:

>1980_bases
ATGATCCCAGAATTAGGACACTTTTCGCTGATTATCGGCTTGGCATTCGCCATGCTGTTAGCCATCGTTCCTTTAGTAGG
TGTAGCACGTAAAGACCAATACCTAGTGCGCTATGCGTGGCCACTAAGTTACGGAATGTTCTTCTTTATTCTCTTCTCTG
TTATCGCGCTTGGCTACAGCTTTGCTGTCGATGACTTCTCTATTGCTTATGTAGCACACCACTCTAATTCTGAGTTACCA
ATCTTCTTTAAGATTGCAGCTGTATGGGGTGGCCATGAAGGTTCTTTGCTATTTTGGGTATTCTCATTATCAGCTTGGGC
AGCAGCAGTAGCATTGTTTAGTAAAGGCTTGGAAGAAGTCTTTACAGCACGAGTGTTGTCAGTACTGGCGATGATCCTTA
TCGGCTTTACGCTGTTTATGTTGTTGACCTCTAGCCCATTTGAGCGATTATTCCCAGTTCCGATGGAAGGGCGTGACCTT
AACCCAATGTTGCAAGATGTTGGTTTGATTTTCCACCCACCAATGCTTTATCTTGGTTATGTAGGTTTTGCTGTAAGCTT
CGCTTTTGCAATTGCAGCCTTGATGAGCGGCAGCCTTGACTCAGCTTGGGCTCGTTGGAGCCGTCCTTGGACCTTAGCAG
CATGGGTATTCCTAACTGGCGGTATCTCACTCGGTTCTTGGTGGGCATACTACGAACTCGGTTGGGGTGGTTGGTGGTTC
TGGGATCCAGTTGAGAACGCCTCTTTCATGCCTTGGTTAATTGGTACAGCGCTACTTCACTCGGTGATCGTAACGGAGAA
GCGTGGCGCATTCCGTAACTGGACTGTTTTGCTTTCGATCTTTGCCTTCTCGCTAAGCTTACTTGGTACCTTTATTGTTC
GTTCTGGCGTGTTAACTTCGGTTCACTCGTTTGCAGCGGATCCAAGTCGAGGTATGTTCATCCTATTGCTACTTGGTTTA
GCCGTGGGTGGTTCACTCACTCTATTTGCTTTCAGAGCAAGTGAGATGCGTAGCCCTGCTCGATTTGAGTTGAAATCTAA
AGAAACCATGATACTGATATGTAACCTACTGCTAACGGTTGCTTGTGGTACAGTATTGCTCGGTACCCTATATCCACTAC
TAATCGACGCATTAGGCATGGGTAAGATTTCTGTAGGACCTCCATACTTTAACGCGGTATTCGTTCCAATCGTTCTAGTT
CTATTTGGCTTTATGGGTGTAGGCCCGGTTATTCGCTGGAAGAAGTCTAAAGCGGGTGAACTTAAGCGTCAGCTAATCGT
CCCCGCAGTGATCTCTGCGGTAGTTGGCTTAGCTGCGCCTTTCCTAGCCGATGGTCAATTTAACATTTGGGTTGTATTCG
GTATTGGTATGGCTGTATGGGTCGCCTTGATGACATTCCGCGCCGCATACAACATGGTTAAAACTAAGGATGGTTCTATT
GATTTAACCCGTCTTGGCCGCAGTCAACTGGGTATGATTATCGCTCACCTTGGTATTGCCGTATCAGTTGTTGGTGCCAC
TATGGTATCTAACTACTCGTTAGAGAAGAGTGTTCGTATGGGTCCTGGTATTTCTCAGGAACTGGCGGGTTACACCTTTA
ATTATGTGGAAACCAAGAATGTTGTTGGTCCTAACTACACGGCTCAACAAGGTCAAATCGAAGTCTATGAGGGTGATGAT
TACGTTACTCTACTAAGACCTGATCGTCGTCAATACAATGTTCGTACTATGGACATGACTGAAGCCGGTATTGATTGGGG
TCTATTCCGAGATCTTTACGTGACAATGGGTGACCCAATTAGTCGTACAGAATACGCAGTGCGTATCAACTATAAGCCTT
ATGTTCGCTGGATCTGGTTTGGCTCTATCTTTATGATGGTCGGTGGTTTCTTCGCCGCATCTGATAAGCGCTACCGCGTA
AGAGCTAAGAGCGCAGAAAAGACTGCAGCTAAAGAAGCTGACAAGTTAGCAACGGCTTAA

Upstream 100 bases:

>100_bases
TGAGCTAAAATTTGTACCTTTTAATTGTGTTAATTGTAAACACGTATGCGATGATTCAGCTAGAGCTTAATCAAGCATGG
TTTAGGACTGAGGAAAACCC

Downstream 100 bases:

>100_bases
TTGGAACAGAGTAAATATGAAAAAGTTAGTATTATTTATTCCACTCGTCGTAGTTTTAGGTATGGGAGTGTTCCTCTATA
AGGGACTCTTCCTTAACCCG

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycK [H]

Number of amino acids: Translated: 659; Mature: 659

Protein sequence:

>659_residues
MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIALGYSFAVDDFSIAYVAHHSNSELP
IFFKIAAVWGGHEGSLLFWVFSLSAWAAAVALFSKGLEEVFTARVLSVLAMILIGFTLFMLLTSSPFERLFPVPMEGRDL
NPMLQDVGLIFHPPMLYLGYVGFAVSFAFAIAALMSGSLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
WDPVENASFMPWLIGTALLHSVIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AVGGSLTLFAFRASEMRSPARFELKSKETMILICNLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGVGPVIRWKKSKAGELKRQLIVPAVISAVVGLAAPFLADGQFNIWVVFGIGMAVWVALMTFRAAYNMVKTKDGSI
DLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISQELAGYTFNYVETKNVVGPNYTAQQGQIEVYEGDD
YVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISRTEYAVRINYKPYVRWIWFGSIFMMVGGFFAASDKRYRV
RAKSAEKTAAKEADKLATA

Sequences:

>Translated_659_residues
MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIALGYSFAVDDFSIAYVAHHSNSELP
IFFKIAAVWGGHEGSLLFWVFSLSAWAAAVALFSKGLEEVFTARVLSVLAMILIGFTLFMLLTSSPFERLFPVPMEGRDL
NPMLQDVGLIFHPPMLYLGYVGFAVSFAFAIAALMSGSLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
WDPVENASFMPWLIGTALLHSVIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AVGGSLTLFAFRASEMRSPARFELKSKETMILICNLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGVGPVIRWKKSKAGELKRQLIVPAVISAVVGLAAPFLADGQFNIWVVFGIGMAVWVALMTFRAAYNMVKTKDGSI
DLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISQELAGYTFNYVETKNVVGPNYTAQQGQIEVYEGDD
YVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISRTEYAVRINYKPYVRWIWFGSIFMMVGGFFAASDKRYRV
RAKSAEKTAAKEADKLATA
>Mature_659_residues
MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIALGYSFAVDDFSIAYVAHHSNSELP
IFFKIAAVWGGHEGSLLFWVFSLSAWAAAVALFSKGLEEVFTARVLSVLAMILIGFTLFMLLTSSPFERLFPVPMEGRDL
NPMLQDVGLIFHPPMLYLGYVGFAVSFAFAIAALMSGSLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
WDPVENASFMPWLIGTALLHSVIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AVGGSLTLFAFRASEMRSPARFELKSKETMILICNLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGVGPVIRWKKSKAGELKRQLIVPAVISAVVGLAAPFLADGQFNIWVVFGIGMAVWVALMTFRAAYNMVKTKDGSI
DLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISQELAGYTFNYVETKNVVGPNYTAQQGQIEVYEGDD
YVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISRTEYAVRINYKPYVRWIWFGSIFMMVGGFFAASDKRYRV
RAKSAEKTAAKEADKLATA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=652, Percent_Identity=48.7730061349693, Blast_Score=600, Evalue=1e-173,
Organism=Escherichia coli, GI1790511, Length=583, Percent_Identity=39.2795883361921, Blast_Score=345, Evalue=5e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72886; Mature: 72886

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIALGYS
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCHH
FAVDDFSIAYVAHHSNSELPIFFKIAAVWGGHEGSLLFWVFSLSAWAAAVALFSKGLEEV
EEECCEEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLSVLAMILIGFTLFMLLTSSPFERLFPVPMEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHHCCHHHHHHH
VGFAVSFAFAIAALMSGSLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEE
WDPVENASFMPWLIGTALLHSVIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAVGGSLTLFAFRASEMRSPARFELKSKETMILICNLLLTV
HHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHCCCCCEEEECCCCHHHHHHHHHHHH
ACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGVGPVIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHH
LKRQLIVPAVISAVVGLAAPFLADGQFNIWVVFGIGMAVWVALMTFRAAYNMVKTKDGSI
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCE
DLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISQELAGYTFNYVETKN
EHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAQQGQIEVYEGDDYVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
SRTEYAVRINYKPYVRWIWFGSIFMMVGGFFAASDKRYRVRAKSAEKTAAKEADKLATA
CCCEEEEEECCCCEEEHHHHHHHHHHHCCHHCCCCCCEEEEECHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIALGYS
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCHH
FAVDDFSIAYVAHHSNSELPIFFKIAAVWGGHEGSLLFWVFSLSAWAAAVALFSKGLEEV
EEECCEEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLSVLAMILIGFTLFMLLTSSPFERLFPVPMEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHHCCHHHHHHH
VGFAVSFAFAIAALMSGSLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEE
WDPVENASFMPWLIGTALLHSVIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAVGGSLTLFAFRASEMRSPARFELKSKETMILICNLLLTV
HHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHCCCCCEEEECCCCHHHHHHHHHHHH
ACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGVGPVIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHH
LKRQLIVPAVISAVVGLAAPFLADGQFNIWVVFGIGMAVWVALMTFRAAYNMVKTKDGSI
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCE
DLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISQELAGYTFNYVETKN
EHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAQQGQIEVYEGDDYVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
SRTEYAVRINYKPYVRWIWFGSIFMMVGGFFAASDKRYRVRAKSAEKTAAKEADKLATA
CCCEEEEEECCCCEEEHHHHHHHHHHHCCHHCCCCCCEEEEECHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA