Click here to switch to the map view.

The map label for this gene is 167626008

Identifier: 167626008

GI number: 167626008

Start: 5006613

End: 5006906

Strand: Reverse

Name: 167626008

Synonym: Shal_4103

Alternate gene names: NA

Gene position: 5006906-5006613 (Counterclockwise)

Preceding gene: 167626014

Following gene: 167626006

Centisome position: 95.79

GC content: 46.26

Gene sequence:

>294_bases
ATGAAAAAATTATTAGCACTGACTGCAGTGGCAGCTATGACTCTGTCTACAAGCGCACTTGCTCAAGATGGTAAAGCTGT
ATATGACAAGGCATGTCAAGTTTGTCACAGCATGGGTGTTGCTGGTGCGCCAAAGACACATGACGTAGCGGCATGGGAAC
CACGCCTAGCTAAAGGTATGCCTGCTCTAGTGTCTTCTGTTAAGTCTGGCCTAAACGCAATGCCACCAGGCGGCATGTGC
ACAGATTGCTCAGATGAAGATTACACCAAAGCAATCGAATATATGTCTAAGTAA

Upstream 100 bases:

>100_bases
TTTGTTGAACTTTGTAGTAACCTAGCCGAGCTAGAATAAGTCTGCCAAAAATTTTAGGGCAGCGTGAGCTTTGTTAGAAT
TTGCATTAGGAACGTATAAG

Downstream 100 bases:

>100_bases
GCTTTACTTTGCATTAAAAAACCGGCCTTTGCCGGTTTTTTTGTGCCTGTGATTCGACCTTGCTAAGCAGGGTGATAGCA
AGGAGACTTAATGCTGTCAC

Product: cytochrome c class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MKKLLALTAVAAMTLSTSALAQDGKAVYDKACQVCHSMGVAGAPKTHDVAAWEPRLAKGMPALVSSVKSGLNAMPPGGMC
TDCSDEDYTKAIEYMSK

Sequences:

>Translated_97_residues
MKKLLALTAVAAMTLSTSALAQDGKAVYDKACQVCHSMGVAGAPKTHDVAAWEPRLAKGMPALVSSVKSGLNAMPPGGMC
TDCSDEDYTKAIEYMSK
>Mature_97_residues
MKKLLALTAVAAMTLSTSALAQDGKAVYDKACQVCHSMGVAGAPKTHDVAAWEPRLAKGMPALVSSVKSGLNAMPPGGMC
TDCSDEDYTKAIEYMSK

Specific function: It is unreactive with cytochrome c reductase or oxidase but seems to function as an intermediate in nitrate respiration of facultative anaerobic pseudmonads [H]

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR002323 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10095; Mature: 10095

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
7.2 %Met     (Translated Protein)
11.3 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
7.2 %Met     (Mature Protein)
11.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLALTAVAAMTLSTSALAQDGKAVYDKACQVCHSMGVAGAPKTHDVAAWEPRLAKGM
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCC
PALVSSVKSGLNAMPPGGMCTDCSDEDYTKAIEYMSK
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKKLLALTAVAAMTLSTSALAQDGKAVYDKACQVCHSMGVAGAPKTHDVAAWEPRLAKGM
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCC
PALVSSVKSGLNAMPPGGMCTDCSDEDYTKAIEYMSK
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA