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The map label for this gene is visC [H]

Identifier: 167625287

GI number: 167625287

Start: 4119680

End: 4120900

Strand: Reverse

Name: visC [H]

Synonym: Shal_3376

Alternate gene names: 167625287

Gene position: 4120900-4119680 (Counterclockwise)

Preceding gene: 167625288

Following gene: 167625286

Centisome position: 78.84

GC content: 50.2

Gene sequence:

>1221_bases
ATGTTAAGCACACAAACTTATGATGTCGCAATCGTTGGTGGAGGCATGGTTGGCCTTGCTACGGCTATTGGTTTAGCGAT
GGAAGGCATTAAAGTCGTAGTGATCGATGCGGGTCAAACCCAAGCGGTATCGGGCGAACCAAGACTCAGAGTTAGCGCCA
TCAATAAGGCCAGTCAGCAACTAATAACTAACTTAGGGGCTTGGCCTTACTTGGCTGCAGCCCGAGTGAGTCCTTACCAA
AAAATGCAGGTGTGGGACAAAGACAGCCTAGGTAAAATCGATTTCGACGCCCACTCCCTGAGTGAAACTCATCTTGGCTC
GATTATCGAAAACGATGCTATCGCTTTCGCATTGGCCGAGCGCGCATCTGAACTGAGCGAGTTGACCTATATCCAAAACC
AACGTTTAGAGCGCATCGCTTTCGGTGAGCGTGAGGCTTGGTTAACCTTAGATAACGGCGACAATGTCAGTGCTGCATTG
GTGGTTGCCGCCGATGGCGCAAATTCTTGGGTACGTGAACAGTGTAAAATCCCGATGACCTTCTGGGATTATAACCACCA
CGCGATAGTGGCCACTATTCGCACCGAGTTGCCTCATGGTAACACTGCAAGACAAGTATTCGACAACGAAGGCCCATTGG
CCTTTCTGCCTCTATATGAAAAAAATCTCTGCTCAATCGTCTGGTCGGTGTCTCCCGATAAAGCCAAAGAGCTACTCGCA
TTAGATAAGGTGAGCTTTGAGCGCGCTTTAACCACCACTTTTGATGGTCGTCTTGGTATGTGCAGCCTCGAGAGTGAGCG
CCAATCCTTTCCATTACGCATGCGTTATGCGCGTCATTTTGCCAGACCACGTTTGTTGCTCGCAGGCGATGCGGCGCATA
CCATTCATCCGCTAGCAGGCCAAGGAGTCAACTTAGGCTTCCTCGATGCCGCCAGCATAGTGGAGGTGGTCAGCGAGCTA
AAACAGCAGGGCAAAGATATCGGTGATTACCGTCATCTACGGGAGCTAGAGCGCTGGCGTAAAGCCGAGGCGCTAGAGAT
GATCACCGTGATGGAGGGCTTTAAAAGGTTATTCCAAGGCGGTAATCCGCTTAAGAAAGCCATCCGCGATCTGGGCCTAA
ATATCGTCGACAATTTTGCGCCATTGAAAACACTGTTTATTCAACAGGCGTTAGGCAACAAGAGTCATCTACCGGGGTTG
TGCAAGCGCAGCGAAAACTAA

Upstream 100 bases:

>100_bases
CTAGCGACTCGCGTGGTTGGACATTCTACGCGCCAGTTAAACACTAGGGTTAATCGTGTTTTTTAGGTCAAAAGCCGTTT
TTATTGAGTAAGGGTACAAG

Downstream 100 bases:

>100_bases
CAATTACAAATCATTAGTGAGAACTAAATAAGTCTTTAATTTCATGGGCTTGATTTTGGATCTTGCTGGATAGTTGTTTT
TATGTAAAAAGTTTACATAT

Product: UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MLSTQTYDVAIVGGGMVGLATAIGLAMEGIKVVVIDAGQTQAVSGEPRLRVSAINKASQQLITNLGAWPYLAAARVSPYQ
KMQVWDKDSLGKIDFDAHSLSETHLGSIIENDAIAFALAERASELSELTYIQNQRLERIAFGEREAWLTLDNGDNVSAAL
VVAADGANSWVREQCKIPMTFWDYNHHAIVATIRTELPHGNTARQVFDNEGPLAFLPLYEKNLCSIVWSVSPDKAKELLA
LDKVSFERALTTTFDGRLGMCSLESERQSFPLRMRYARHFARPRLLLAGDAAHTIHPLAGQGVNLGFLDAASIVEVVSEL
KQQGKDIGDYRHLRELERWRKAEALEMITVMEGFKRLFQGGNPLKKAIRDLGLNIVDNFAPLKTLFIQQALGNKSHLPGL
CKRSEN

Sequences:

>Translated_406_residues
MLSTQTYDVAIVGGGMVGLATAIGLAMEGIKVVVIDAGQTQAVSGEPRLRVSAINKASQQLITNLGAWPYLAAARVSPYQ
KMQVWDKDSLGKIDFDAHSLSETHLGSIIENDAIAFALAERASELSELTYIQNQRLERIAFGEREAWLTLDNGDNVSAAL
VVAADGANSWVREQCKIPMTFWDYNHHAIVATIRTELPHGNTARQVFDNEGPLAFLPLYEKNLCSIVWSVSPDKAKELLA
LDKVSFERALTTTFDGRLGMCSLESERQSFPLRMRYARHFARPRLLLAGDAAHTIHPLAGQGVNLGFLDAASIVEVVSEL
KQQGKDIGDYRHLRELERWRKAEALEMITVMEGFKRLFQGGNPLKKAIRDLGLNIVDNFAPLKTLFIQQALGNKSHLPGL
CKRSEN
>Mature_406_residues
MLSTQTYDVAIVGGGMVGLATAIGLAMEGIKVVVIDAGQTQAVSGEPRLRVSAINKASQQLITNLGAWPYLAAARVSPYQ
KMQVWDKDSLGKIDFDAHSLSETHLGSIIENDAIAFALAERASELSELTYIQNQRLERIAFGEREAWLTLDNGDNVSAAL
VVAADGANSWVREQCKIPMTFWDYNHHAIVATIRTELPHGNTARQVFDNEGPLAFLPLYEKNLCSIVWSVSPDKAKELLA
LDKVSFERALTTTFDGRLGMCSLESERQSFPLRMRYARHFARPRLLLAGDAAHTIHPLAGQGVNLGFLDAASIVEVVSEL
KQQGKDIGDYRHLRELERWRKAEALEMITVMEGFKRLFQGGNPLKKAIRDLGLNIVDNFAPLKTLFIQQALGNKSHLPGL
CKRSEN

Specific function: Not yet known [H]

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiH/COQ6 family [H]

Homologues:

Organism=Homo sapiens, GI32967305, Length=414, Percent_Identity=31.4009661835749, Blast_Score=181, Evalue=9e-46,
Organism=Homo sapiens, GI32967307, Length=368, Percent_Identity=32.3369565217391, Blast_Score=155, Evalue=8e-38,
Organism=Escherichia coli, GI1789273, Length=390, Percent_Identity=53.5897435897436, Blast_Score=425, Evalue=1e-120,
Organism=Escherichia coli, GI1786883, Length=393, Percent_Identity=33.8422391857506, Blast_Score=215, Evalue=4e-57,
Organism=Escherichia coli, GI1789274, Length=393, Percent_Identity=29.2620865139949, Blast_Score=161, Evalue=7e-41,
Organism=Caenorhabditis elegans, GI25146631, Length=436, Percent_Identity=30.5045871559633, Blast_Score=183, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6321694, Length=457, Percent_Identity=26.2582056892779, Blast_Score=120, Evalue=3e-28,
Organism=Drosophila melanogaster, GI19920760, Length=435, Percent_Identity=32.8735632183908, Blast_Score=177, Evalue=8e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042
- InterPro:   IPR018168
- InterPro:   IPR010971 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 44852; Mature: 44852

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS01304 UBIH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTQTYDVAIVGGGMVGLATAIGLAMEGIKVVVIDAGQTQAVSGEPRLRVSAINKASQQ
CCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCEEEHHHHHHHHH
LITNLGAWPYLAAARVSPYQKMQVWDKDSLGKIDFDAHSLSETHLGSIIENDAIAFALAE
HHHHCCCCHHHHHHHCCCHHHHEECCCCCCCCEECCHHHCCHHHHHHHHHCCHHHHHHHH
RASELSELTYIQNQRLERIAFGEREAWLTLDNGDNVSAALVVAADGANSWVREQCKIPMT
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCCHHHHHHCCCCEE
FWDYNHHAIVATIRTELPHGNTARQVFDNEGPLAFLPLYEKNLCSIVWSVSPDKAKELLA
EEECCCCEEEEEEEECCCCCCHHHHHHCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHH
LDKVSFERALTTTFDGRLGMCSLESERQSFPLRMRYARHFARPRLLLAGDAAHTIHPLAG
HHHHHHHHHHHHCCCCCCCEEECCHHHHCCCHHHHHHHHHCCCEEEEECCCHHHCCCCCC
QGVNLGFLDAASIVEVVSELKQQGKDIGDYRHLRELERWRKAEALEMITVMEGFKRLFQG
CCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNPLKKAIRDLGLNIVDNFAPLKTLFIQQALGNKSHLPGLCKRSEN
CCHHHHHHHHCCCHHHHCHHHHHHHHHHHHHCCCCCCCHHHHCCCC
>Mature Secondary Structure
MLSTQTYDVAIVGGGMVGLATAIGLAMEGIKVVVIDAGQTQAVSGEPRLRVSAINKASQQ
CCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCEEEHHHHHHHHH
LITNLGAWPYLAAARVSPYQKMQVWDKDSLGKIDFDAHSLSETHLGSIIENDAIAFALAE
HHHHCCCCHHHHHHHCCCHHHHEECCCCCCCCEECCHHHCCHHHHHHHHHCCHHHHHHHH
RASELSELTYIQNQRLERIAFGEREAWLTLDNGDNVSAALVVAADGANSWVREQCKIPMT
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCCHHHHHHCCCCEE
FWDYNHHAIVATIRTELPHGNTARQVFDNEGPLAFLPLYEKNLCSIVWSVSPDKAKELLA
EEECCCCEEEEEEEECCCCCCHHHHHHCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHH
LDKVSFERALTTTFDGRLGMCSLESERQSFPLRMRYARHFARPRLLLAGDAAHTIHPLAG
HHHHHHHHHHHHCCCCCCCEEECCHHHHCCCHHHHHHHHHCCCEEEEECCCHHHCCCCCC
QGVNLGFLDAASIVEVVSELKQQGKDIGDYRHLRELERWRKAEALEMITVMEGFKRLFQG
CCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNPLKKAIRDLGLNIVDNFAPLKTLFIQQALGNKSHLPGLCKRSEN
CCHHHHHHHHCCCHHHHCHHHHHHHHHHHHHCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With NADH2 or NADPH2 as one donor, and incorporation of one atom of oxygen [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1339425; 9278503 [H]