Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is yejM [C]

Identifier: 167625036

GI number: 167625036

Start: 3810870

End: 3812696

Strand: Reverse

Name: yejM [C]

Synonym: Shal_3124

Alternate gene names: 167625036

Gene position: 3812696-3810870 (Counterclockwise)

Preceding gene: 167625037

Following gene: 167625034

Centisome position: 72.94

GC content: 41.49

Gene sequence:

>1827_bases
ATGTTACCTTTGCGCGCACGAATGAAGTCTCACGCGGTGCTAACATTAATAAATGCGTTGATATTTATTATGTTATCTGT
GAGTTACTTTGATTACCTTCCCGCTAATCTAACACCTTTAGATTGGGGCTACATTTTCATAGCTACGGCTGGGCAGATGG
GGTTGCTTGCTGGACTGCTTGGCTTTGTTAGCTTACCGCTTGGTTTGATTAAATCGACTCTAGTGAGAGTATTATCAACC
TCGGCCATTTTTACTATCGCGCTGATAATCTTGTATGGTGATACTCAGGTTTTTGCTCAGTATCGCTTCCATATTCAACC
AGTATTGGTTGAAATGATTTTCTCCGGTGGCATAGTCGAATTTTCGGCGGCAAATTATCTGTTTGCCGCGTCGTTAATTA
TGCTGGTATTTGCGCTGCAATGTGGGATTTATTGGCTCATATTGACCAGAGGTTGTGACCATCTCAAGCTGACTGGACGA
GCTATTGCTTACCTTCTTCTCTTATGTGTGGTTGCCACGCACGCTGTCCATATATGGGCGAGCGCCAATGCAGTGAATTC
AATCACCAACTTTAGCTGTTTTTTGCCTCTGTTTTACCCGGCGACAGCCAACAGGTTAATGCTGAAGTATGGTTTAGTGA
ATGAAGCAGAGTTAGCTCAGCAAAATAAGTTAAAAATCGATAATCATAGTAATTTATCTTACCCATTAGCGCCGATAACT
TATGAACCCGTTACGCCAACTAACATTTTATTTATTGTGATTGATTCTTGGCGTCACGATAGCTTTAGCGCTGAAGTGAC
TCCAAATATTTGGCAATACGCTCAAAATGGTCAGGTGTTTAAGCAACATTATTCCACCGGTAATGCGACCCGTGCGGGAA
TATTTGGCTTATTTTATGGCTTACCATCCACCTACTGGCATAGCTTTTATCATAATCGCCAATCACCGATAATCATGGAC
CGAATACAGCAACTCGATTATCAGTTAGGCATTTTTTCTTCCGCACACTTAATAAAGCCTGAGTTTGATGAAACGGTTTT
TGTTCATGTTCCTAATTTAAGAGTGCGTTCAAAAGGTGCGACCAAGCCAAGCCGAGACATTGAGATAACCCAAGAGTGGC
TTGAATGGGATAAACATAAAGATCCTACGCGTCCAGCGTTCTCATTTTTGTTTTATGACTCTCCCCATGGATATGATTTT
CCAGAGGATTACCCAAATAAATTTGAGCCACAAGTGTCTAGAATGGATTACTTAAATCTAAATAATGATACCGATAGACT
GCCTATCCTGAACCGCTATAACACTAGCGTGCACTTTAACGATTCGCTGATAGGCAAAGTCCTCACCCAGCTCAAAGAGT
CAGGAGAATTGGCCAACACGTTAGTGGTGGTCACCGGGGACCATGGTCAGGAAATCAACGACAATAAGCTAAACTTTTGG
GGCCACAATGGTAACTTTACCGATCCTCAGATAAAAGTGCCTTTTATCATGTTTGGTGCAGATCTTAAGTCCGGGGTTAA
TCAATACGTTACTGATCATATGGACTTAGTTCCTACGCTGATGCAAACCTACTTAGGTTCCACCAGTCCGGCAGAAAATT
ATACGGCAGGCTATAACTTGTTCAAACGAGATCTTGAACGACGAAAATGGCTCATTCTTTCAAGTTACAGTGATTATGCC
TTAGTCAATGAAAATAGCATTTTGCATGTTTCTGGCACTCAAGGTGGTTATCAGTATATGGATAGACATAATCATTCTAA
AGAAGGTAAGCCTGATTTTCAGCAGCTAAATCAAGCTTATGAGTTGATGAAACGTTACTTGGAGTAG

Upstream 100 bases:

>100_bases
ATTGCGAACTGTGTCACGCATTTTGAGTGAATGAGTGGGTAAAATCCGCGATTTTTATGTTTCCCATCACTGTAGGGCGA
AACGAACAGGAACGGTGAAA

Downstream 100 bases:

>100_bases
TATTCAGTTGCCGCACCAATTTGACCCGATGAATAGGTGCGATTAATTAGTATGGTAAAGGCTGTGATGATTTACAGTGG
AAATTAAACCCTTGGCTTCC

Product: sulfatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 608; Mature: 608

Protein sequence:

>608_residues
MLPLRARMKSHAVLTLINALIFIMLSVSYFDYLPANLTPLDWGYIFIATAGQMGLLAGLLGFVSLPLGLIKSTLVRVLST
SAIFTIALIILYGDTQVFAQYRFHIQPVLVEMIFSGGIVEFSAANYLFAASLIMLVFALQCGIYWLILTRGCDHLKLTGR
AIAYLLLLCVVATHAVHIWASANAVNSITNFSCFLPLFYPATANRLMLKYGLVNEAELAQQNKLKIDNHSNLSYPLAPIT
YEPVTPTNILFIVIDSWRHDSFSAEVTPNIWQYAQNGQVFKQHYSTGNATRAGIFGLFYGLPSTYWHSFYHNRQSPIIMD
RIQQLDYQLGIFSSAHLIKPEFDETVFVHVPNLRVRSKGATKPSRDIEITQEWLEWDKHKDPTRPAFSFLFYDSPHGYDF
PEDYPNKFEPQVSRMDYLNLNNDTDRLPILNRYNTSVHFNDSLIGKVLTQLKESGELANTLVVVTGDHGQEINDNKLNFW
GHNGNFTDPQIKVPFIMFGADLKSGVNQYVTDHMDLVPTLMQTYLGSTSPAENYTAGYNLFKRDLERRKWLILSSYSDYA
LVNENSILHVSGTQGGYQYMDRHNHSKEGKPDFQQLNQAYELMKRYLE

Sequences:

>Translated_608_residues
MLPLRARMKSHAVLTLINALIFIMLSVSYFDYLPANLTPLDWGYIFIATAGQMGLLAGLLGFVSLPLGLIKSTLVRVLST
SAIFTIALIILYGDTQVFAQYRFHIQPVLVEMIFSGGIVEFSAANYLFAASLIMLVFALQCGIYWLILTRGCDHLKLTGR
AIAYLLLLCVVATHAVHIWASANAVNSITNFSCFLPLFYPATANRLMLKYGLVNEAELAQQNKLKIDNHSNLSYPLAPIT
YEPVTPTNILFIVIDSWRHDSFSAEVTPNIWQYAQNGQVFKQHYSTGNATRAGIFGLFYGLPSTYWHSFYHNRQSPIIMD
RIQQLDYQLGIFSSAHLIKPEFDETVFVHVPNLRVRSKGATKPSRDIEITQEWLEWDKHKDPTRPAFSFLFYDSPHGYDF
PEDYPNKFEPQVSRMDYLNLNNDTDRLPILNRYNTSVHFNDSLIGKVLTQLKESGELANTLVVVTGDHGQEINDNKLNFW
GHNGNFTDPQIKVPFIMFGADLKSGVNQYVTDHMDLVPTLMQTYLGSTSPAENYTAGYNLFKRDLERRKWLILSSYSDYA
LVNENSILHVSGTQGGYQYMDRHNHSKEGKPDFQQLNQAYELMKRYLE
>Mature_608_residues
MLPLRARMKSHAVLTLINALIFIMLSVSYFDYLPANLTPLDWGYIFIATAGQMGLLAGLLGFVSLPLGLIKSTLVRVLST
SAIFTIALIILYGDTQVFAQYRFHIQPVLVEMIFSGGIVEFSAANYLFAASLIMLVFALQCGIYWLILTRGCDHLKLTGR
AIAYLLLLCVVATHAVHIWASANAVNSITNFSCFLPLFYPATANRLMLKYGLVNEAELAQQNKLKIDNHSNLSYPLAPIT
YEPVTPTNILFIVIDSWRHDSFSAEVTPNIWQYAQNGQVFKQHYSTGNATRAGIFGLFYGLPSTYWHSFYHNRQSPIIMD
RIQQLDYQLGIFSSAHLIKPEFDETVFVHVPNLRVRSKGATKPSRDIEITQEWLEWDKHKDPTRPAFSFLFYDSPHGYDF
PEDYPNKFEPQVSRMDYLNLNNDTDRLPILNRYNTSVHFNDSLIGKVLTQLKESGELANTLVVVTGDHGQEINDNKLNFW
GHNGNFTDPQIKVPFIMFGADLKSGVNQYVTDHMDLVPTLMQTYLGSTSPAENYTAGYNLFKRDLERRKWLILSSYSDYA
LVNENSILHVSGTQGGYQYMDRHNHSKEGKPDFQQLNQAYELMKRYLE

Specific function: Unknown

COG id: COG3083

COG function: function code R; Predicted hydrolase of alkaline phosphatase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yejM [H]

Homologues:

Organism=Escherichia coli, GI1788515, Length=576, Percent_Identity=25.3472222222222, Blast_Score=186, Evalue=5e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR012159
- InterPro:   IPR000917 [H]

Pfam domain/function: PF00884 Sulfatase [H]

EC number: NA

Molecular weight: Translated: 69196; Mature: 69196

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLRARMKSHAVLTLINALIFIMLSVSYFDYLPANLTPLDWGYIFIATAGQMGLLAGLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHH
GFVSLPLGLIKSTLVRVLSTSAIFTIALIILYGDTQVFAQYRFHIQPVLVEMIFSGGIVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
FSAANYLFAASLIMLVFALQCGIYWLILTRGCDHLKLTGRAIAYLLLLCVVATHAVHIWA
ECHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEE
SANAVNSITNFSCFLPLFYPATANRLMLKYGLVNEAELAQQNKLKIDNHSNLSYPLAPIT
CCCHHHHHCCCCEEEHEECCCCCCCEEEEECCCCHHHHHHCCCEEECCCCCCCCCCCCCE
YEPVTPTNILFIVIDSWRHDSFSAEVTPNIWQYAQNGQVFKQHYSTGNATRAGIFGLFYG
ECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHC
LPSTYWHSFYHNRQSPIIMDRIQQLDYQLGIFSSAHLIKPEFDETVFVHVPNLRVRSKGA
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCEEEECCCC
TKPSRDIEITQEWLEWDKHKDPTRPAFSFLFYDSPHGYDFPEDYPNKFEPQVSRMDYLNL
CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHCEEECC
NNDTDRLPILNRYNTSVHFNDSLIGKVLTQLKESGELANTLVVVTGDHGQEINDNKLNFW
CCCCCCCCCEECCCCEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEE
GHNGNFTDPQIKVPFIMFGADLKSGVNQYVTDHMDLVPTLMQTYLGSTSPAENYTAGYNL
ECCCCCCCCEEEECEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
FKRDLERRKWLILSSYSDYALVNENSILHVSGTQGGYQYMDRHNHSKEGKPDFQQLNQAY
HHHHHHHCEEEEEECCCCEEEECCCCEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHH
ELMKRYLE
HHHHHHCC
>Mature Secondary Structure
MLPLRARMKSHAVLTLINALIFIMLSVSYFDYLPANLTPLDWGYIFIATAGQMGLLAGLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHH
GFVSLPLGLIKSTLVRVLSTSAIFTIALIILYGDTQVFAQYRFHIQPVLVEMIFSGGIVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
FSAANYLFAASLIMLVFALQCGIYWLILTRGCDHLKLTGRAIAYLLLLCVVATHAVHIWA
ECHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEE
SANAVNSITNFSCFLPLFYPATANRLMLKYGLVNEAELAQQNKLKIDNHSNLSYPLAPIT
CCCHHHHHCCCCEEEHEECCCCCCCEEEEECCCCHHHHHHCCCEEECCCCCCCCCCCCCE
YEPVTPTNILFIVIDSWRHDSFSAEVTPNIWQYAQNGQVFKQHYSTGNATRAGIFGLFYG
ECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHC
LPSTYWHSFYHNRQSPIIMDRIQQLDYQLGIFSSAHLIKPEFDETVFVHVPNLRVRSKGA
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCEEEECCCC
TKPSRDIEITQEWLEWDKHKDPTRPAFSFLFYDSPHGYDFPEDYPNKFEPQVSRMDYLNL
CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHCEEECC
NNDTDRLPILNRYNTSVHFNDSLIGKVLTQLKESGELANTLVVVTGDHGQEINDNKLNFW
CCCCCCCCCEECCCCEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEE
GHNGNFTDPQIKVPFIMFGADLKSGVNQYVTDHMDLVPTLMQTYLGSTSPAENYTAGYNL
ECCCCCCCCEEEECEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
FKRDLERRKWLILSSYSDYALVNENSILHVSGTQGGYQYMDRHNHSKEGKPDFQQLNQAY
HHHHHHHCEEEEEECCCCEEEECCCCEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHH
ELMKRYLE
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]