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The map label for this gene is 167625001

Identifier: 167625001

GI number: 167625001

Start: 3768156

End: 3769301

Strand: Reverse

Name: 167625001

Synonym: Shal_3088

Alternate gene names: NA

Gene position: 3769301-3768156 (Counterclockwise)

Preceding gene: 167625002

Following gene: 167624994

Centisome position: 72.11

GC content: 42.84

Gene sequence:

>1146_bases
ATGTTACAAGGACGACAACGCCTAAATCGCCGTAATTTGATCTGTGCAACTCTCTTGGCGAGCGCAATGGTTTTATCTCC
TCAGGCCGTAGCCTCAGAGTTTGGCGACGCTTATTCAGCCTATAAAGCGGCTGTTACAACCAAGGATAAAGCGGATACCC
AGATTTATGCACTTAAGGCTTACGAGCTTGGCAAAGTCAAACTCGGAGCCGATAGTTTAGATACGGCTATATTGGCACTG
AATGCTGGCGATGCCTTGATTGCTAACCTGCCAGAGTACACCTTCGATGAAGAAAGCACTGCCAAGTCAAAAAAGCTAAA
ACAGCAGGCGTTCGAGCTGTATCAGGTGACACAAGGAACTTATCGCAAAACATATGGCGAAGAGGCGATTGAGTTGATTG
ACCCGCTTATGGGGTTAAGTGATGCCAGCAGTAAAAAAGATGCCCGCGAGTATTTAGATGACGCACTGGATATCGCCGAA
GACTCAGACGATGCAATGTTAATCGCCGATACCCAGATGGCCTATTTTGAACGTTTGGTTAACTCTCCTTATTACACCCG
CAAAGTGCGTAATTATGCTTTTGATGCACAAGAAGCTTACAGTGAATTATTGCCTGAAAATGCAATGAAACGTGTACTCA
CGAGCTTTAGGGTTGGTAACGTACGCTTTGCAGAGAAAGATTATGATGAAGCTGAAGCGCTATTTTTGGGCGTTATCACT
CAATTTCAAAAGCTTGATTATACTCATCCCTATGAGTTGGCAGCTCATGCCAAGTTAGTACAGATTTATGAGCTTGATGG
CGAAAGTGAAAAATCGACTCAACACTGTATAGCGATAGGTAATATGAAGCCATGGAAGGAAGATATTGAGCCGACGCCAC
TGTTTCGTAAAAATCCTGATTATCCAATATCTTATGCTAGGGCTGGCAAAAGTGGCTCTGCCCAGCTAAGTTTTACTATT
GATGAAATGGGTTTTGTTAAAGACCCTGTTGTTCTTGATACTATTGGCGGAGAAAAATTTGCAACAGAATCGCTTTTAGC
ATTAAAACAGTGGCGTTATGCGCCTAAGTTTGTTGATGGAAAAGCTGTTGAAGCAAAAGAGGTGAAAGTTCAGTTAGACT
ACTATATCGAGAAAAAGAAAAGGTAA

Upstream 100 bases:

>100_bases
AATTTAGTAGCCGCTGTACAAAAGTTGTACTGAAACAACTTTTGGCATCAATGAAGATTAAAATCGGAAAAATAAGCTTA
ACAGTGAATAAGGATTTTTC

Downstream 100 bases:

>100_bases
TGCTAATCAGTGCGTATATCGCGTTCTGAAATAGCTTAATAAAGCCCTAATAGCAATTAGGGCTTTTTCGTACCAGTTTA
ATATTGATTAAACCAAGTAT

Product: TonB family protein

Products: NA

Alternate protein names: NB Domain-Containing Protein; NB2 Protein; NB-Like Protein; NB Protein; NB Domain Protein; NB-Like Periplasmic Protein; Outer Membrane Transport Energization Protein nB

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MLQGRQRLNRRNLICATLLASAMVLSPQAVASEFGDAYSAYKAAVTTKDKADTQIYALKAYELGKVKLGADSLDTAILAL
NAGDALIANLPEYTFDEESTAKSKKLKQQAFELYQVTQGTYRKTYGEEAIELIDPLMGLSDASSKKDAREYLDDALDIAE
DSDDAMLIADTQMAYFERLVNSPYYTRKVRNYAFDAQEAYSELLPENAMKRVLTSFRVGNVRFAEKDYDEAEALFLGVIT
QFQKLDYTHPYELAAHAKLVQIYELDGESEKSTQHCIAIGNMKPWKEDIEPTPLFRKNPDYPISYARAGKSGSAQLSFTI
DEMGFVKDPVVLDTIGGEKFATESLLALKQWRYAPKFVDGKAVEAKEVKVQLDYYIEKKKR

Sequences:

>Translated_381_residues
MLQGRQRLNRRNLICATLLASAMVLSPQAVASEFGDAYSAYKAAVTTKDKADTQIYALKAYELGKVKLGADSLDTAILAL
NAGDALIANLPEYTFDEESTAKSKKLKQQAFELYQVTQGTYRKTYGEEAIELIDPLMGLSDASSKKDAREYLDDALDIAE
DSDDAMLIADTQMAYFERLVNSPYYTRKVRNYAFDAQEAYSELLPENAMKRVLTSFRVGNVRFAEKDYDEAEALFLGVIT
QFQKLDYTHPYELAAHAKLVQIYELDGESEKSTQHCIAIGNMKPWKEDIEPTPLFRKNPDYPISYARAGKSGSAQLSFTI
DEMGFVKDPVVLDTIGGEKFATESLLALKQWRYAPKFVDGKAVEAKEVKVQLDYYIEKKKR
>Mature_381_residues
MLQGRQRLNRRNLICATLLASAMVLSPQAVASEFGDAYSAYKAAVTTKDKADTQIYALKAYELGKVKLGADSLDTAILAL
NAGDALIANLPEYTFDEESTAKSKKLKQQAFELYQVTQGTYRKTYGEEAIELIDPLMGLSDASSKKDAREYLDDALDIAE
DSDDAMLIADTQMAYFERLVNSPYYTRKVRNYAFDAQEAYSELLPENAMKRVLTSFRVGNVRFAEKDYDEAEALFLGVIT
QFQKLDYTHPYELAAHAKLVQIYELDGESEKSTQHCIAIGNMKPWKEDIEPTPLFRKNPDYPISYARAGKSGSAQLSFTI
DEMGFVKDPVVLDTIGGEKFATESLLALKQWRYAPKFVDGKAVEAKEVKVQLDYYIEKKKR

Specific function: Unknown

COG id: COG0810

COG function: function code M; Periplasmic protein TonB, links inner and outer membranes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42832; Mature: 42832

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQGRQRLNRRNLICATLLASAMVLSPQAVASEFGDAYSAYKAAVTTKDKADTQIYALKA
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEE
YELGKVKLGADSLDTAILALNAGDALIANLPEYTFDEESTAKSKKLKQQAFELYQVTQGT
EECCEEEECCCCCCEEEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
YRKTYGEEAIELIDPLMGLSDASSKKDAREYLDDALDIAEDSDDAMLIADTQMAYFERLV
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHH
NSPYYTRKVRNYAFDAQEAYSELLPENAMKRVLTSFRVGNVRFAEKDYDEAEALFLGVIT
CCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHH
QFQKLDYTHPYELAAHAKLVQIYELDGESEKSTQHCIAIGNMKPWKEDIEPTPLFRKNPD
HHHHCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCC
YPISYARAGKSGSAQLSFTIDEMGFVKDPVVLDTIGGEKFATESLLALKQWRYAPKFVDG
CCCHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
KAVEAKEVKVQLDYYIEKKKR
CCCCHHHEEEEEEEEHHCCCC
>Mature Secondary Structure
MLQGRQRLNRRNLICATLLASAMVLSPQAVASEFGDAYSAYKAAVTTKDKADTQIYALKA
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEE
YELGKVKLGADSLDTAILALNAGDALIANLPEYTFDEESTAKSKKLKQQAFELYQVTQGT
EECCEEEECCCCCCEEEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
YRKTYGEEAIELIDPLMGLSDASSKKDAREYLDDALDIAEDSDDAMLIADTQMAYFERLV
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHH
NSPYYTRKVRNYAFDAQEAYSELLPENAMKRVLTSFRVGNVRFAEKDYDEAEALFLGVIT
CCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHH
QFQKLDYTHPYELAAHAKLVQIYELDGESEKSTQHCIAIGNMKPWKEDIEPTPLFRKNPD
HHHHCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCC
YPISYARAGKSGSAQLSFTIDEMGFVKDPVVLDTIGGEKFATESLLALKQWRYAPKFVDG
CCCHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
KAVEAKEVKVQLDYYIEKKKR
CCCCHHHEEEEEEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA