| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is feoB [H]
Identifier: 167624694
GI number: 167624694
Start: 3369573
End: 3371867
Strand: Reverse
Name: feoB [H]
Synonym: Shal_2776
Alternate gene names: 167624694
Gene position: 3371867-3369573 (Counterclockwise)
Preceding gene: 167624695
Following gene: 167624693
Centisome position: 64.51
GC content: 45.19
Gene sequence:
>2295_bases ATGGATAAACAATTTAACTGCGTAACAGTGGGTAACCCTAATGCGGGCAAATCAACACTGTTTAATGCATTAACCGGATC TAATCAGCAGGTTGGTAACTGGTCAGGCGTAACCGTAGAGAAAAAAACAGGCCAATTTGCACTGCAAGGTTCAGACGTTT TCTTAACCGATCTTCCGGGTATATATGATCTTCTTCCTGCAGGTAATAGCTGTGACTGTTCTTTAGACGAGCAAATTGCC CAGCAGTATCTAGCCGATCAACCTATTGACGGTATTATTAACTTAGTTGATGCGACCAATATCGAGCGCCACTTATATCT AACGGTACAGCTTCGTGAGTTGGGCATTCCAATGGTGGTTGTGCTTAATAAGATTGACGCAGCAGTTGAACGCGGTATTC ATATCGATATCGCCAAGATGACTGAAGAGTTAGGCTGTCCTGTTGTTGCCGTGTGTTCACGTGAACCTAAAGATATCGAA AAAGTTAAGCTGCAGTTTGTTGCGCTACTCGATGGCAAGGTCTCTGAAGCGCCACTGGTGCTAGATTATGATGAAGAGAT TGAATCAGCTGTATCGAATCTATTGTCTCAAGATCCAGAGTTAAGCCGTGGCCGAGCCTTGGCAATGCTTGCAAATGGCT TAGGCTGTGGTAAATGTAAAAACAGTCAAATGGCGAGCGAAGTCGAGCTGTACTCTCAAGCGCTATCTAGCCAAGGCAAA GATATTGAGATCATGATTGCGACAACGCGTTTTAACTACGTTGAGCAAGTCTTTACTGGCTCAGTGCAGAGCGACGGTGC CGAGACCTTCACCGATAAACTCGATAAGTTGGTGTTGCACCCGATTTTTGGGATCCCTGTTTTCCTATTCGTGATGTATT TGATGTTCATGTTTAGTATTAATGTGGGCAGTTCATTTATTGATTTCTTCGATATTACCGCCGGTGCTATTTTTGTAGAC CATCTAGGCGCATTTATGTCTAGTCTAGGTTCTCCGACTTGGTTAGTGACCATTATTGCTGGTGGCGTGGGTCAAGGTAT TCAAACAGTTGCAACCTTTATTCCTGTTATTGCTGCGCTATTCCTAGCACTGTCGGTGCTTGAAGGCTCTGGCTACATGG CGCGAGCAGCGTTTGTGGTTGATGGCTTAATGCGCCGAATTGGTCTTCCAGGTCGTGCATTTGTGCCTATGATTGTCGGT TTTGGATGTTCAGTACCGGCGATTATGGCAACCCGTACTTTAGGCAGTGAGCGCGAGCGTATCGTTACTGGTATGATGGC GCCGTTTATGTCTTGTGGTGCAAGATTACCTGTTTACGCACTGTTTGCGGCAGCGTTCTTCCCAGAGTCGGGGCAGAATC TAGTGTTCTTGCTTTATATAATAGGTATTTTTGCCGCTATCGGTACAGGCTTACTGTTACGTTCGACTCTACTTCCTGGT TCTAGCAGCGCAGTGGTGATGGAGCTACCAAGTTACGAGAAACCAAAGTTCAAGACGGTAATGGCTCGTACAGGTAAGCG TACCAAGAGCTTTATTATGGGGGCGGGTAAGACCATTGTGATAGTGGTGACTTTACTTAACTTTGTAAATGCAATCGGTA TTGATGGTACGTTTGGTCATGAAGATAGCTCCGAATCAGTATTGAGTGTTGCCAGTCAAAAAGTAACACCACTGTTTGCA CCTATGGGTGTAGAGCAAGATAACTGGCCTGCAACAGTAGGTATTATTACGGGTATTTTTGCGAAAGAAGCAGTAGTTGG TACTTTGAATAGTCTTTATTCAGACGCTGGCGCAGGTGATGAAGCATTAGCACCAATTAGCGACACCTTTGGTGAAGCGC TAGCGACAATTCCTGAGAACTTGTTTGGTATTTCTCCTGATGACCCACTGTCTATTTCAGTCGGTGATGTATCATCGGTA GAGGCTGCATCAGAAGAACTAGAAGTTGATACTTCAACCTTTGGCGCGCTACAAGCTGGTTTCGCAGGGGTGACTGCTGC ATTTGCTTACTTACTGTTTATTTTACTATACACCCCTTGTGTGGCCGCTATTGGCGCATTGGTGAATGAGTTTGGTAGCC GCTGGGCAACATTTGCAGGGCTTTGGACATTTGGTTTAGCTTACGGTGTTGCCACGGTATTCTACCAAGGTGCAACGTTT GCACAGCACCCATTGCAATCAAGCTTATGGATTGGCTTCTTCGCAATAGCCTTAGTTGTGTTCTACCTCTGGCTTAAGAA GAAGGGTAAGAAAACCCAGACCATTATCCCAGGCATTAAAGTGATTACTGAATAA
Upstream 100 bases:
>100_bases CGTAGGGCACCAATGGGCTCGGGTGTTGAATTGGATATCCGCGGCAGTAAGTTATGCATGCGTCGCGATTTAGCAGATAT TATTGAGGTTGAAAAAGCGA
Downstream 100 bases:
>100_bases CGCGAATAGCGTATACTGTTATCAAATAATAAAAAGCAGCGATGATTCGCTGCTTTTTGCGCTATAAATATAGCCATTAG AGAGGTTTTTAAACCTCAGT
Product: ferrous iron transport protein B
Products: Fe (II) [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 764; Mature: 764
Protein sequence:
>764_residues MDKQFNCVTVGNPNAGKSTLFNALTGSNQQVGNWSGVTVEKKTGQFALQGSDVFLTDLPGIYDLLPAGNSCDCSLDEQIA QQYLADQPIDGIINLVDATNIERHLYLTVQLRELGIPMVVVLNKIDAAVERGIHIDIAKMTEELGCPVVAVCSREPKDIE KVKLQFVALLDGKVSEAPLVLDYDEEIESAVSNLLSQDPELSRGRALAMLANGLGCGKCKNSQMASEVELYSQALSSQGK DIEIMIATTRFNYVEQVFTGSVQSDGAETFTDKLDKLVLHPIFGIPVFLFVMYLMFMFSINVGSSFIDFFDITAGAIFVD HLGAFMSSLGSPTWLVTIIAGGVGQGIQTVATFIPVIAALFLALSVLEGSGYMARAAFVVDGLMRRIGLPGRAFVPMIVG FGCSVPAIMATRTLGSERERIVTGMMAPFMSCGARLPVYALFAAAFFPESGQNLVFLLYIIGIFAAIGTGLLLRSTLLPG SSSAVVMELPSYEKPKFKTVMARTGKRTKSFIMGAGKTIVIVVTLLNFVNAIGIDGTFGHEDSSESVLSVASQKVTPLFA PMGVEQDNWPATVGIITGIFAKEAVVGTLNSLYSDAGAGDEALAPISDTFGEALATIPENLFGISPDDPLSISVGDVSSV EAASEELEVDTSTFGALQAGFAGVTAAFAYLLFILLYTPCVAAIGALVNEFGSRWATFAGLWTFGLAYGVATVFYQGATF AQHPLQSSLWIGFFAIALVVFYLWLKKKGKKTQTIIPGIKVITE
Sequences:
>Translated_764_residues MDKQFNCVTVGNPNAGKSTLFNALTGSNQQVGNWSGVTVEKKTGQFALQGSDVFLTDLPGIYDLLPAGNSCDCSLDEQIA QQYLADQPIDGIINLVDATNIERHLYLTVQLRELGIPMVVVLNKIDAAVERGIHIDIAKMTEELGCPVVAVCSREPKDIE KVKLQFVALLDGKVSEAPLVLDYDEEIESAVSNLLSQDPELSRGRALAMLANGLGCGKCKNSQMASEVELYSQALSSQGK DIEIMIATTRFNYVEQVFTGSVQSDGAETFTDKLDKLVLHPIFGIPVFLFVMYLMFMFSINVGSSFIDFFDITAGAIFVD HLGAFMSSLGSPTWLVTIIAGGVGQGIQTVATFIPVIAALFLALSVLEGSGYMARAAFVVDGLMRRIGLPGRAFVPMIVG FGCSVPAIMATRTLGSERERIVTGMMAPFMSCGARLPVYALFAAAFFPESGQNLVFLLYIIGIFAAIGTGLLLRSTLLPG SSSAVVMELPSYEKPKFKTVMARTGKRTKSFIMGAGKTIVIVVTLLNFVNAIGIDGTFGHEDSSESVLSVASQKVTPLFA PMGVEQDNWPATVGIITGIFAKEAVVGTLNSLYSDAGAGDEALAPISDTFGEALATIPENLFGISPDDPLSISVGDVSSV EAASEELEVDTSTFGALQAGFAGVTAAFAYLLFILLYTPCVAAIGALVNEFGSRWATFAGLWTFGLAYGVATVFYQGATF AQHPLQSSLWIGFFAIALVVFYLWLKKKGKKTQTIIPGIKVITE >Mature_764_residues MDKQFNCVTVGNPNAGKSTLFNALTGSNQQVGNWSGVTVEKKTGQFALQGSDVFLTDLPGIYDLLPAGNSCDCSLDEQIA QQYLADQPIDGIINLVDATNIERHLYLTVQLRELGIPMVVVLNKIDAAVERGIHIDIAKMTEELGCPVVAVCSREPKDIE KVKLQFVALLDGKVSEAPLVLDYDEEIESAVSNLLSQDPELSRGRALAMLANGLGCGKCKNSQMASEVELYSQALSSQGK DIEIMIATTRFNYVEQVFTGSVQSDGAETFTDKLDKLVLHPIFGIPVFLFVMYLMFMFSINVGSSFIDFFDITAGAIFVD HLGAFMSSLGSPTWLVTIIAGGVGQGIQTVATFIPVIAALFLALSVLEGSGYMARAAFVVDGLMRRIGLPGRAFVPMIVG FGCSVPAIMATRTLGSERERIVTGMMAPFMSCGARLPVYALFAAAFFPESGQNLVFLLYIIGIFAAIGTGLLLRSTLLPG SSSAVVMELPSYEKPKFKTVMARTGKRTKSFIMGAGKTIVIVVTLLNFVNAIGIDGTFGHEDSSESVLSVASQKVTPLFA PMGVEQDNWPATVGIITGIFAKEAVVGTLNSLYSDAGAGDEALAPISDTFGEALATIPENLFGISPDDPLSISVGDVSSV EAASEELEVDTSTFGALQAGFAGVTAAFAYLLFILLYTPCVAAIGALVNEFGSRWATFAGLWTFGLAYGVATVFYQGATF AQHPLQSSLWIGFFAIALVVFYLWLKKKGKKTQTIIPGIKVITE
Specific function: Fe(2+) uptake system, probably driven by GTP [H]
COG id: COG0370
COG function: function code P; Fe2+ transport system protein B
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the feoB (TC 9.A.8) family [H]
Homologues:
Organism=Escherichia coli, GI1789813, Length=745, Percent_Identity=41.744966442953, Blast_Score=534, Evalue=1e-153,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003373 - InterPro: IPR011640 - InterPro: IPR011619 - InterPro: IPR011642 - InterPro: IPR006073 [H]
Pfam domain/function: PF07664 FeoB_C; PF02421 FeoB_N; PF07670 Gate [H]
EC number: NA
Molecular weight: Translated: 81525; Mature: 81525
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKQFNCVTVGNPNAGKSTLFNALTGSNQQVGNWSGVTVEKKTGQFALQGSDVFLTDLPG CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEECCCEEEECCCC IYDLLPAGNSCDCSLDEQIAQQYLADQPIDGIINLVDATNIERHLYLTVQLRELGIPMVV HHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCEE VLNKIDAAVERGIHIDIAKMTEELGCPVVAVCSREPKDIEKVKLQFVALLDGKVSEAPLV HHHHHHHHHHCCCEEEHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHEECCCCCCCCEE LDYDEEIESAVSNLLSQDPELSRGRALAMLANGLGCGKCKNSQMASEVELYSQALSSQGK EECHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC DIEIMIATTRFNYVEQVFTGSVQSDGAETFTDKLDKLVLHPIFGIPVFLFVMYLMFMFSI CEEEEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVGSSFIDFFDITAGAIFVDHLGAFMSSLGSPTWLVTIIAGGVGQGIQTVATFIPVIAAL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH FLALSVLEGSGYMARAAFVVDGLMRRIGLPGRAFVPMIVGFGCSVPAIMATRTLGSERER HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHH IVTGMMAPFMSCGARLPVYALFAAAFFPESGQNLVFLLYIIGIFAAIGTGLLLRSTLLPG HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC SSSAVVMELPSYEKPKFKTVMARTGKRTKSFIMGAGKTIVIVVTLLNFVNAIGIDGTFGH CCCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC EDSSESVLSVASQKVTPLFAPMGVEQDNWPATVGIITGIFAKEAVVGTLNSLYSDAGAGD CCCHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EALAPISDTFGEALATIPENLFGISPDDPLSISVGDVSSVEAASEELEVDTSTFGALQAG CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHH FAGVTAAFAYLLFILLYTPCVAAIGALVNEFGSRWATFAGLWTFGLAYGVATVFYQGATF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH AQHPLQSSLWIGFFAIALVVFYLWLKKKGKKTQTIIPGIKVITE HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEECC >Mature Secondary Structure MDKQFNCVTVGNPNAGKSTLFNALTGSNQQVGNWSGVTVEKKTGQFALQGSDVFLTDLPG CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEECCCEEEECCCC IYDLLPAGNSCDCSLDEQIAQQYLADQPIDGIINLVDATNIERHLYLTVQLRELGIPMVV HHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCEE VLNKIDAAVERGIHIDIAKMTEELGCPVVAVCSREPKDIEKVKLQFVALLDGKVSEAPLV HHHHHHHHHHCCCEEEHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHEECCCCCCCCEE LDYDEEIESAVSNLLSQDPELSRGRALAMLANGLGCGKCKNSQMASEVELYSQALSSQGK EECHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC DIEIMIATTRFNYVEQVFTGSVQSDGAETFTDKLDKLVLHPIFGIPVFLFVMYLMFMFSI CEEEEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVGSSFIDFFDITAGAIFVDHLGAFMSSLGSPTWLVTIIAGGVGQGIQTVATFIPVIAAL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH FLALSVLEGSGYMARAAFVVDGLMRRIGLPGRAFVPMIVGFGCSVPAIMATRTLGSERER HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHH IVTGMMAPFMSCGARLPVYALFAAAFFPESGQNLVFLLYIIGIFAAIGTGLLLRSTLLPG HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC SSSAVVMELPSYEKPKFKTVMARTGKRTKSFIMGAGKTIVIVVTLLNFVNAIGIDGTFGH CCCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC EDSSESVLSVASQKVTPLFAPMGVEQDNWPATVGIITGIFAKEAVVGTLNSLYSDAGAGD CCCHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EALAPISDTFGEALATIPENLFGISPDDPLSISVGDVSSVEAASEELEVDTSTFGALQAG CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHH FAGVTAAFAYLLFILLYTPCVAAIGALVNEFGSRWATFAGLWTFGLAYGVATVFYQGATF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH AQHPLQSSLWIGFFAIALVVFYLWLKKKGKKTQTIIPGIKVITE HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Fe (II) [Periplasm] [C]
Specific reaction: Fe (II) [Periplasm] = Fe (II) [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA