| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is btuB [H]
Identifier: 167624645
GI number: 167624645
Start: 3304889
End: 3307738
Strand: Reverse
Name: btuB [H]
Synonym: Shal_2727
Alternate gene names: 167624645
Gene position: 3307738-3304889 (Counterclockwise)
Preceding gene: 167624646
Following gene: 167624643
Centisome position: 63.28
GC content: 42.91
Gene sequence:
>2850_bases ATGTATAAGAATAATTTACTAACTAACTCAGTGCGCTTAGCGCTAGTTAGCGGTGCAATGACAGCAGCGTTTACCGCACC AGCAGTATTTGCGGCAGAAGAAGATAAAGTTGAACGTATTGAAGTGACTGGTTCGCGAATTAAGCGTGTAGATATGGAAG GGGCTAATCCCGTTCAGATTATTACACGCAAAGATCTTGTTGAGTCAGGTATATCTAACCTTGGTGATATTCTTCAAGAA ATTCCAGCCGTAGCTGGTGCTGCAACAAACACTGCTGTGAACAACGGCGGCTCTGGTGCTGTTCGTGTATCTCTGCGAGG CTTAGGCAGTGCTAGAACATTGGTTCTAATTAATGGTCGTCGTATGGTTAATTCTGGGACCGGTGCTGATTCATCAGCAG ATTTGAGTACTATTCCTGTAGCAATTATTAAGCGAGTAGAAGTCTTAAAAGATGGTGCATCAGCGGTATATGGCTCTGAT GCTATTGCTGGTGTTGTAAACATTATTACTCGTAACGACTTTGAAGGTTTTGAAGTCAATGCATCTTACGATGGGTCGAC TGCTGAGTGGGACGGAGAAACAAAGACAATCGATGTAACTATGGGTGTTACAAACGAGAACTCGAATGCTGTAATTAGCG CGTACTACACTCAACAGACTGAACAGATGTCTGGAGACCGAGATTGGTCAGCGTTTGAATACGACCTCAATCCAGAAACT GGAGAGCTAGATAAAGGTGGTTCTTCTGCACCACCGTGGGGTCGTTATAATGGTATTGACGGCAATATTGCTGGTCAAGA GTGTAGTTCATTTACTCATGGTGCGGGCAGTGGTCCAGGTCAGTCAGATCCTTCTGACTTTTCAAATCCAACGGGCTATG ACTGCTGGGATTGGGACAAAGATACCTATAACTATGCACCAGCTAACTACCATCTAACTCCGCAAGAGCGCTATGGCGTA TTTGCAGGTGGTGAATATCAATTTACAGATTCTCTGCGCTTTTTTACTGAGTTATCATTTAACCGTCGTACCTCAAAGAC TAAGCTAGCACCGTTGCCTTTAGCGCCTTTAGCTTTCTTTGGTTGGACTGATGCTCCATATTCAGCTGATAACTACTATA ACCAAGAGTTAGGCCCTAAAGATAAAGATGGTAACAGTGTAGATATTACTGATTGGCGTCGCCGTATGGTTGAAACTGGT GGACGTGATACTTCATTCCAAGTTGATACTGTCCGTGCTGTATTTGGCATGGCTGGTGAGTTTGGCGAAACTTGGGGTTA TGAAGTTTCTTATGTATATGGTAATAACTCCTCCTCTTCAGCTAGAGCAGGTGGAGTAAACTTTGAAAAGGTTTCACAAG CAGTTGGGCCATCTTTTAAAGATGCAGAAGGCAATATTGTATGTGGAACTGTTGATAATCCAATTTCTGACTGTGTGTCT TTAAATACTTTCGGTGTCCCTGGAACAGATACTCAGGTATCTCAAGAGATGCTAGATTTTATCACATTTGAAGCTCATGA CTTAGGTGAGAATGAGCAAACAGTATTAAGTGCTAGCGTATTTGGTGATGCATTTGAGCTTCCCGCTGGTTCTGTTGGAA TGGTATTTGGTGCAGAGCATCGTGAAGAATCTGGTTCTGACTTACCTGATGCACTAATTGCGTTAGGAATTACAAGTGGT ACTACTCGTCAAAAAACACAGGGCAGTTATGAGGTTGATGAATTATATACCGAAATGAACTTCCCGCTGCTTTCTGGTGT CGTTGGTGCTGAGAGCTTAGAGATTGACGGTGCACTGCGTTACTCTGACTACAATACATTTGGCGATACAACAAACTATA AGCTTGGTTTGCGCTGGATACCACTTGATGGATTGATGTTCCGTAGCACTGTATCTACAGCGTTCCGTGCACCTTCAACG AGTGAGTTATTCGCAGGGGCTTCAGATAATAGCCCAAGTGTCACCGATAAATGCGCAACAAACCCGACTCCTTTCTGTAT TGCTGATGGCGTTCCTGCTGGTGGTTTTGAGCCAATTGGTGACCAACTATCTTCAACACGTGGTGGTAATGAAGATCTAA CACCAGAAGAAGCGGACACGTTGACCGTAGGTATTGTGTATAGCCCTAGCTTTATTGAGGGTCTATCTTTAACCGTAGAT TATTGGGATATCAAACTTGATAACGCGATTAGCACAATTGGTGAACAGTTAATCCTTGATAAGTGTGCGGACGAGGGCCT TTACTGTGACCAGATTACTCGTTATGGGGCTGACGCTGGTGCACTTTATGGTAACTCAAGTGATATTGATGATCGTAATG TAAACGTTGGCTCTATTACCTCTAAAGGTTATGACTTCAACGCAGTATATGCTATTGAAACTGGTATTGGTGATTTACGC TTCAACTTAGATTCTACATACTACGATACATATGATATCACTCAAGCAGATGGTTCGGTTGTTGTGAATGCTGGTTGGTT CCGTCGTTCAAGTGGTGATGGTAACTTCCCTGAGTGGAAAACCAACTTTAACATTAATCTTTCTCAAGATGATTGGGCTG CAAACTGGAAGATTCGTTACATTGGTGAGTCGCTAGAACCATTTGATGCGAACAACGATGGTGAGACAGATTTAGATGAT TTAAGCGATTCTCGCACTATTGATAGCCAGACTATCCATGATGCCGGCTTCACTTATTTCTTTGAAAATGTTACTGCAAC TGTCGGTGTAAACAATATCTTCGACCAAGACCCTCCATATGCAGCAACAGGGTTTAATGATAATACTGATCCGCGTACAT ACTCTACAACAGGTAGGCATCTATATTTAGGTGTTGGTGTGAAGTTCTAA
Upstream 100 bases:
>100_bases ATGTGTTTTTATTTGTTTGCAAAATAAGTCTTATGTAAGTTTTTGTTAAAGAATGTTTGTTTTGCTAAAAATAATAAAAG AGAGTCCAGGGAGATTTACA
Downstream 100 bases:
>100_bases GGCGAAATCTAATTTAGTTTTAAGGTTCGACTTAAAGACATGGCTTGTATAAGCCATGTCTTTTTATTTAAAGGACATAA TTTATGTTTAAAATAACGTT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 949; Mature: 949
Protein sequence:
>949_residues MYKNNLLTNSVRLALVSGAMTAAFTAPAVFAAEEDKVERIEVTGSRIKRVDMEGANPVQIITRKDLVESGISNLGDILQE IPAVAGAATNTAVNNGGSGAVRVSLRGLGSARTLVLINGRRMVNSGTGADSSADLSTIPVAIIKRVEVLKDGASAVYGSD AIAGVVNIITRNDFEGFEVNASYDGSTAEWDGETKTIDVTMGVTNENSNAVISAYYTQQTEQMSGDRDWSAFEYDLNPET GELDKGGSSAPPWGRYNGIDGNIAGQECSSFTHGAGSGPGQSDPSDFSNPTGYDCWDWDKDTYNYAPANYHLTPQERYGV FAGGEYQFTDSLRFFTELSFNRRTSKTKLAPLPLAPLAFFGWTDAPYSADNYYNQELGPKDKDGNSVDITDWRRRMVETG GRDTSFQVDTVRAVFGMAGEFGETWGYEVSYVYGNNSSSSARAGGVNFEKVSQAVGPSFKDAEGNIVCGTVDNPISDCVS LNTFGVPGTDTQVSQEMLDFITFEAHDLGENEQTVLSASVFGDAFELPAGSVGMVFGAEHREESGSDLPDALIALGITSG TTRQKTQGSYEVDELYTEMNFPLLSGVVGAESLEIDGALRYSDYNTFGDTTNYKLGLRWIPLDGLMFRSTVSTAFRAPST SELFAGASDNSPSVTDKCATNPTPFCIADGVPAGGFEPIGDQLSSTRGGNEDLTPEEADTLTVGIVYSPSFIEGLSLTVD YWDIKLDNAISTIGEQLILDKCADEGLYCDQITRYGADAGALYGNSSDIDDRNVNVGSITSKGYDFNAVYAIETGIGDLR FNLDSTYYDTYDITQADGSVVVNAGWFRRSSGDGNFPEWKTNFNINLSQDDWAANWKIRYIGESLEPFDANNDGETDLDD LSDSRTIDSQTIHDAGFTYFFENVTATVGVNNIFDQDPPYAATGFNDNTDPRTYSTTGRHLYLGVGVKF
Sequences:
>Translated_949_residues MYKNNLLTNSVRLALVSGAMTAAFTAPAVFAAEEDKVERIEVTGSRIKRVDMEGANPVQIITRKDLVESGISNLGDILQE IPAVAGAATNTAVNNGGSGAVRVSLRGLGSARTLVLINGRRMVNSGTGADSSADLSTIPVAIIKRVEVLKDGASAVYGSD AIAGVVNIITRNDFEGFEVNASYDGSTAEWDGETKTIDVTMGVTNENSNAVISAYYTQQTEQMSGDRDWSAFEYDLNPET GELDKGGSSAPPWGRYNGIDGNIAGQECSSFTHGAGSGPGQSDPSDFSNPTGYDCWDWDKDTYNYAPANYHLTPQERYGV FAGGEYQFTDSLRFFTELSFNRRTSKTKLAPLPLAPLAFFGWTDAPYSADNYYNQELGPKDKDGNSVDITDWRRRMVETG GRDTSFQVDTVRAVFGMAGEFGETWGYEVSYVYGNNSSSSARAGGVNFEKVSQAVGPSFKDAEGNIVCGTVDNPISDCVS LNTFGVPGTDTQVSQEMLDFITFEAHDLGENEQTVLSASVFGDAFELPAGSVGMVFGAEHREESGSDLPDALIALGITSG TTRQKTQGSYEVDELYTEMNFPLLSGVVGAESLEIDGALRYSDYNTFGDTTNYKLGLRWIPLDGLMFRSTVSTAFRAPST SELFAGASDNSPSVTDKCATNPTPFCIADGVPAGGFEPIGDQLSSTRGGNEDLTPEEADTLTVGIVYSPSFIEGLSLTVD YWDIKLDNAISTIGEQLILDKCADEGLYCDQITRYGADAGALYGNSSDIDDRNVNVGSITSKGYDFNAVYAIETGIGDLR FNLDSTYYDTYDITQADGSVVVNAGWFRRSSGDGNFPEWKTNFNINLSQDDWAANWKIRYIGESLEPFDANNDGETDLDD LSDSRTIDSQTIHDAGFTYFFENVTATVGVNNIFDQDPPYAATGFNDNTDPRTYSTTGRHLYLGVGVKF >Mature_949_residues MYKNNLLTNSVRLALVSGAMTAAFTAPAVFAAEEDKVERIEVTGSRIKRVDMEGANPVQIITRKDLVESGISNLGDILQE IPAVAGAATNTAVNNGGSGAVRVSLRGLGSARTLVLINGRRMVNSGTGADSSADLSTIPVAIIKRVEVLKDGASAVYGSD AIAGVVNIITRNDFEGFEVNASYDGSTAEWDGETKTIDVTMGVTNENSNAVISAYYTQQTEQMSGDRDWSAFEYDLNPET GELDKGGSSAPPWGRYNGIDGNIAGQECSSFTHGAGSGPGQSDPSDFSNPTGYDCWDWDKDTYNYAPANYHLTPQERYGV FAGGEYQFTDSLRFFTELSFNRRTSKTKLAPLPLAPLAFFGWTDAPYSADNYYNQELGPKDKDGNSVDITDWRRRMVETG GRDTSFQVDTVRAVFGMAGEFGETWGYEVSYVYGNNSSSSARAGGVNFEKVSQAVGPSFKDAEGNIVCGTVDNPISDCVS LNTFGVPGTDTQVSQEMLDFITFEAHDLGENEQTVLSASVFGDAFELPAGSVGMVFGAEHREESGSDLPDALIALGITSG TTRQKTQGSYEVDELYTEMNFPLLSGVVGAESLEIDGALRYSDYNTFGDTTNYKLGLRWIPLDGLMFRSTVSTAFRAPST SELFAGASDNSPSVTDKCATNPTPFCIADGVPAGGFEPIGDQLSSTRGGNEDLTPEEADTLTVGIVYSPSFIEGLSLTVD YWDIKLDNAISTIGEQLILDKCADEGLYCDQITRYGADAGALYGNSSDIDDRNVNVGSITSKGYDFNAVYAIETGIGDLR FNLDSTYYDTYDITQADGSVVVNAGWFRRSSGDGNFPEWKTNFNINLSQDDWAANWKIRYIGESLEPFDANNDGETDLDD LSDSRTIDSQTIHDAGFTYFFENVTATVGVNNIFDQDPPYAATGFNDNTDPRTYSTTGRHLYLGVGVKF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=173, Percent_Identity=34.6820809248555, Blast_Score=99, Evalue=2e-21, Organism=Escherichia coli, GI1788478, Length=163, Percent_Identity=38.6503067484663, Blast_Score=97, Evalue=5e-21,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 102355; Mature: 102355
Theoretical pI: Translated: 4.00; Mature: 4.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKNNLLTNSVRLALVSGAMTAAFTAPAVFAAEEDKVERIEVTGSRIKRVDMEGANPVQI CCCCCEECCCEEEEEECCCHHHHHHCCEEEECCCCCCEEEEECCCEEEEEECCCCCCEEE ITRKDLVESGISNLGDILQEIPAVAGAATNTAVNNGGSGAVRVSLRGLGSARTLVLINGR EEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC RMVNSGTGADSSADLSTIPVAIIKRVEVLKDGASAVYGSDAIAGVVNIITRNDFEGFEVN EEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCEEEE ASYDGSTAEWDGETKTIDVTMGVTNENSNAVISAYYTQQTEQMSGDRDWSAFEYDLNPET CCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCHHHHCCCCCCCCEEEEECCCCC GELDKGGSSAPPWGRYNGIDGNIAGQECSSFTHGAGSGPGQSDPSDFSNPTGYDCWDWDK CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DTYNYAPANYHLTPQERYGVFAGGEYQFTDSLRFFTELSFNRRTSKTKLAPLPLAPLAFF CCCCCCCCCEEECHHHHCCEEECCCEEECCHHHEEHHHCCCCCCCCCEECCCCCCHHHHC GWTDAPYSADNYYNQELGPKDKDGNSVDITDWRRRMVETGGRDTSFQVDTVRAVFGMAGE CCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCC FGETWGYEVSYVYGNNSSSSARAGGVNFEKVSQAVGPSFKDAEGNIVCGTVDNPISDCVS CCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHC LNTFGVPGTDTQVSQEMLDFITFEAHDLGENEQTVLSASVFGDAFELPAGSVGMVFGAEH CCCCCCCCCCHHHHHHHHHHHHCCHHCCCCCCCEEEEEECCCCHHCCCCCCEEEEECCCC REESGSDLPDALIALGITSGTTRQKTQGSYEVDELYTEMNFPLLSGVVGAESLEIDGALR CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHCCCCEEEECCEEE YSDYNTFGDTTNYKLGLRWIPLDGLMFRSTVSTAFRAPSTSELFAGASDNSPSVTDKCAT ECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCHHHEECCCCCCCCCCHHCCC NPTPFCIADGVPAGGFEPIGDQLSSTRGGNEDLTPEEADTLTVGIVYSPSFIEGLSLTVD CCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCHHHCCEEEEEE YWDIKLDNAISTIGEQLILDKCADEGLYCDQITRYGADAGALYGNSSDIDDRNVNVGSIT EEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEECCCCCCCCCCCCCCCEEE SKGYDFNAVYAIETGIGDLRFNLDSTYYDTYDITQADGSVVVNAGWFRRSSGDGNFPEWK CCCCCCEEEEEEECCCCEEEEECCCEEEECEEEEECCCCEEEECCEEEECCCCCCCCCEE TNFNINLSQDDWAANWKIRYIGESLEPFDANNDGETDLDDLSDSRTIDSQTIHDAGFTYF EEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHCCCEEE FENVTATVGVNNIFDQDPPYAATGFNDNTDPRTYSTTGRHLYLGVGVKF EECEEEEECCCCCCCCCCCEEECCCCCCCCCCEEECCCCEEEEEEEECC >Mature Secondary Structure MYKNNLLTNSVRLALVSGAMTAAFTAPAVFAAEEDKVERIEVTGSRIKRVDMEGANPVQI CCCCCEECCCEEEEEECCCHHHHHHCCEEEECCCCCCEEEEECCCEEEEEECCCCCCEEE ITRKDLVESGISNLGDILQEIPAVAGAATNTAVNNGGSGAVRVSLRGLGSARTLVLINGR EEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC RMVNSGTGADSSADLSTIPVAIIKRVEVLKDGASAVYGSDAIAGVVNIITRNDFEGFEVN EEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCEEEE ASYDGSTAEWDGETKTIDVTMGVTNENSNAVISAYYTQQTEQMSGDRDWSAFEYDLNPET CCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCHHHHCCCCCCCCEEEEECCCCC GELDKGGSSAPPWGRYNGIDGNIAGQECSSFTHGAGSGPGQSDPSDFSNPTGYDCWDWDK CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DTYNYAPANYHLTPQERYGVFAGGEYQFTDSLRFFTELSFNRRTSKTKLAPLPLAPLAFF CCCCCCCCCEEECHHHHCCEEECCCEEECCHHHEEHHHCCCCCCCCCEECCCCCCHHHHC GWTDAPYSADNYYNQELGPKDKDGNSVDITDWRRRMVETGGRDTSFQVDTVRAVFGMAGE CCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCC FGETWGYEVSYVYGNNSSSSARAGGVNFEKVSQAVGPSFKDAEGNIVCGTVDNPISDCVS CCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHC LNTFGVPGTDTQVSQEMLDFITFEAHDLGENEQTVLSASVFGDAFELPAGSVGMVFGAEH CCCCCCCCCCHHHHHHHHHHHHCCHHCCCCCCCEEEEEECCCCHHCCCCCCEEEEECCCC REESGSDLPDALIALGITSGTTRQKTQGSYEVDELYTEMNFPLLSGVVGAESLEIDGALR CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHCCCCEEEECCEEE YSDYNTFGDTTNYKLGLRWIPLDGLMFRSTVSTAFRAPSTSELFAGASDNSPSVTDKCAT ECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCHHHEECCCCCCCCCCHHCCC NPTPFCIADGVPAGGFEPIGDQLSSTRGGNEDLTPEEADTLTVGIVYSPSFIEGLSLTVD CCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCHHHCCEEEEEE YWDIKLDNAISTIGEQLILDKCADEGLYCDQITRYGADAGALYGNSSDIDDRNVNVGSIT EEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEECCCCCCCCCCCCCCCEEE SKGYDFNAVYAIETGIGDLRFNLDSTYYDTYDITQADGSVVVNAGWFRRSSGDGNFPEWK CCCCCCEEEEEEECCCCEEEEECCCEEEECEEEEECCCCEEEECCEEEECCCCCCCCCEE TNFNINLSQDDWAANWKIRYIGESLEPFDANNDGETDLDDLSDSRTIDSQTIHDAGFTYF EEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHCCCEEE FENVTATVGVNNIFDQDPPYAATGFNDNTDPRTYSTTGRHLYLGVGVKF EECEEEEECCCCCCCCCCCEEECCCCCCCCCCEEECCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11598060 [H]