| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624643
Identifier: 167624643
GI number: 167624643
Start: 3302628
End: 3303410
Strand: Reverse
Name: 167624643
Synonym: Shal_2725
Alternate gene names: NA
Gene position: 3303410-3302628 (Counterclockwise)
Preceding gene: 167624645
Following gene: 167624642
Centisome position: 63.2
GC content: 44.32
Gene sequence:
>783_bases ATGTCCAAGGTAAGCAATAAAACAAAAATCGCTACAGCGCTCATTGGCGCACTAGCCTTAGCAGGCAGCAACTTAGTGAT TGCCGATCCTCTTTCTGATGTTCAGAAAGCTGACGCTAAAATTCACGCGGAAGCCGCAACATCTCAAAAGAAAGTCGATA AGTATTTTGACCAAGCTCAGGACATGTTGTTCGAGTATGGGTCAGTTGCTGATGAACGTGAATCACTAAAATCTTATAAC GACTACGTAGCAGGTCTGGTTGCAGACCAAGAAGCTACCATGAAATCTATTCAAGGTGACATCAACGGTGTTGATGCATT ACGTCAGGGCGTAGTGCCATTGATGTTTAAGATGGTTGACGCATTAGAGCAGTTTGTTGCTCTAGACCTTCCATTTAACA CTGAAACACGTGTTGCACGTGTCGAAAACCTTAAAAACCTACTTAACAGTGCTGAAGTCACTCTCGCAGAAAAGTATCGT CTAATCCTAGATGCATACTCAATCGAGCGTGAATATGGTGGCTTCATTGCGGTTAAAACCGGTCAGTTAGAACTTGACGG TAAAGAAGTACTCGTAGACTTCTTTAACCTCGGTCGTGTAGCACTTTACGCTCAGAGCTTAGATGGTAAGTCAGCCTGGA TGTATAACGATGAGACTAAAGGCTGGGATAAGCTAGATGATAGCTACCTGCGTGAACTCACTAAAGGTATCCGCATTGCA CGTAAACAGGGTGCACCGGATCTATTCTCGTTACCAATTCCTGCTGCGGAGGCTGCACAATAA
Upstream 100 bases:
>100_bases AGACAGGCTTAGGCAATAGGGAACTAAAGCAAAATAAGCGCATGCACCCTGTTGTCGATAAGTTAAAGCTTTTTTAATCA CTTCAAATTGGTTGGGAACT
Downstream 100 bases:
>100_bases TGAAGAAGTTTATCACTACAGCAATCGTTGCTGCGAGCCTGTCATTAACGGCCGGTATTGCTAGCGCTGCAGATGCACCG AAAACAATCGATCAACTACT
Product: hypothetical protein
Products: NA
Alternate protein names: Chromosome Segregation ATPase; MotA/lQ/ExbB Proton Channel
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MSKVSNKTKIATALIGALALAGSNLVIADPLSDVQKADAKIHAEAATSQKKVDKYFDQAQDMLFEYGSVADERESLKSYN DYVAGLVADQEATMKSIQGDINGVDALRQGVVPLMFKMVDALEQFVALDLPFNTETRVARVENLKNLLNSAEVTLAEKYR LILDAYSIEREYGGFIAVKTGQLELDGKEVLVDFFNLGRVALYAQSLDGKSAWMYNDETKGWDKLDDSYLRELTKGIRIA RKQGAPDLFSLPIPAAEAAQ
Sequences:
>Translated_260_residues MSKVSNKTKIATALIGALALAGSNLVIADPLSDVQKADAKIHAEAATSQKKVDKYFDQAQDMLFEYGSVADERESLKSYN DYVAGLVADQEATMKSIQGDINGVDALRQGVVPLMFKMVDALEQFVALDLPFNTETRVARVENLKNLLNSAEVTLAEKYR LILDAYSIEREYGGFIAVKTGQLELDGKEVLVDFFNLGRVALYAQSLDGKSAWMYNDETKGWDKLDDSYLRELTKGIRIA RKQGAPDLFSLPIPAAEAAQ >Mature_259_residues SKVSNKTKIATALIGALALAGSNLVIADPLSDVQKADAKIHAEAATSQKKVDKYFDQAQDMLFEYGSVADERESLKSYND YVAGLVADQEATMKSIQGDINGVDALRQGVVPLMFKMVDALEQFVALDLPFNTETRVARVENLKNLLNSAEVTLAEKYRL ILDAYSIEREYGGFIAVKTGQLELDGKEVLVDFFNLGRVALYAQSLDGKSAWMYNDETKGWDKLDDSYLRELTKGIRIAR KQGAPDLFSLPIPAAEAAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28597; Mature: 28466
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVSNKTKIATALIGALALAGSNLVIADPLSDVQKADAKIHAEAATSQKKVDKYFDQAQ CCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DMLFEYGSVADERESLKSYNDYVAGLVADQEATMKSIQGDINGVDALRQGVVPLMFKMVD HHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHH ALEQFVALDLPFNTETRVARVENLKNLLNSAEVTLAEKYRLILDAYSIEREYGGFIAVKT HHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC GQLELDGKEVLVDFFNLGRVALYAQSLDGKSAWMYNDETKGWDKLDDSYLRELTKGIRIA CEEEECHHHHHHHHHHCCHHHHHHHCCCCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHH RKQGAPDLFSLPIPAAEAAQ HHCCCCCEEECCCCCCCCCC >Mature Secondary Structure SKVSNKTKIATALIGALALAGSNLVIADPLSDVQKADAKIHAEAATSQKKVDKYFDQAQ CCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DMLFEYGSVADERESLKSYNDYVAGLVADQEATMKSIQGDINGVDALRQGVVPLMFKMVD HHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHH ALEQFVALDLPFNTETRVARVENLKNLLNSAEVTLAEKYRLILDAYSIEREYGGFIAVKT HHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC GQLELDGKEVLVDFFNLGRVALYAQSLDGKSAWMYNDETKGWDKLDDSYLRELTKGIRIA CEEEECHHHHHHHHHHCCHHHHHHHCCCCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHH RKQGAPDLFSLPIPAAEAAQ HHCCCCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA