| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624606
Identifier: 167624606
GI number: 167624606
Start: 3261095
End: 3261901
Strand: Reverse
Name: 167624606
Synonym: Shal_2688
Alternate gene names: NA
Gene position: 3261901-3261095 (Counterclockwise)
Preceding gene: 167624607
Following gene: 167624589
Centisome position: 62.41
GC content: 45.11
Gene sequence:
>807_bases ATGGCCCGTTTGCGTTACCTTTCCATTTCACCTCTCTTGTTTATATTGCCTGCTCATTCTGAGACCGATTACAGCCATTA CGCATTTGCTAATTATTTGGGTAGCGGACTCTATCGCACGGCTGGTCAAAACGCGACGGTCGCCAATATTCCCATTAGTT TCGACTTGCAGCGCAGTGAAACAGAATCATTAGTCCTGAAAACACCGGTATCCATGGGTTTTTTCAACTTTACTTGGCGT GATTTACCCGAAGGTGAATTTCCCTCGAGTGTCGGAACCTTAACGGTAACTCCTGGATTGGAGTATCGAATCAAAACCTC AGATACCCATGAATTCCAAACGTATGCCGATCTTGGTTTTGGCACCAACTTTACCAATAGTAACGATGTGATTATCTATT CAGCTGGGATGTCGAGCCTGCTTGATTTTGAGTTGGGCGATTCTGATCCTGTATGGGTGAACCGTATATTTTTTGCCGGT TATAGCACCTTACATGATGGTTCGAGCGAGACATATTCCGCAGTGCAATCCGGTGTCGATATCGGTACCAATCTTCATTT TCAGCTTGGGGGAGTCGATATGGAACCTCGATTTTTCGCCGCAGGCTATTGGTATTTCGATCGCTTAAAGTTCACTACGC CATTTGAAGAGGACGTGCTGGTGGCGAATAGTTTTGAAGCTGGGATCACCTTGGCTTTTTCAAAGCCGATAGGTTGGGAC TTAGTTAATATTGATCGCTTTGGGATTAGTTACCGGGCGGGTGATGGTGTTGAGGTTTGGCGTTTAATTTTTGAGTTTCC TCTCTAA
Upstream 100 bases:
>100_bases AATCCCTTTCGGTAAAAGTGTTAGTTTTCATGGATTTTACCCTGCAATACCGCTATATTCGGGCTATCGATTAGAGTTTA ATTAAGTTTAAAGTCAATTT
Downstream 100 bases:
>100_bases AAATCATCGTAAATCATTGGCTTAATCAGATCGACGATTAAACCAACGTATTTAGTCTCTTGCTTAATGGGATTATTTTC CCCAAATTTTCGCATTGACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MARLRYLSISPLLFILPAHSETDYSHYAFANYLGSGLYRTAGQNATVANIPISFDLQRSETESLVLKTPVSMGFFNFTWR DLPEGEFPSSVGTLTVTPGLEYRIKTSDTHEFQTYADLGFGTNFTNSNDVIIYSAGMSSLLDFELGDSDPVWVNRIFFAG YSTLHDGSSETYSAVQSGVDIGTNLHFQLGGVDMEPRFFAAGYWYFDRLKFTTPFEEDVLVANSFEAGITLAFSKPIGWD LVNIDRFGISYRAGDGVEVWRLIFEFPL
Sequences:
>Translated_268_residues MARLRYLSISPLLFILPAHSETDYSHYAFANYLGSGLYRTAGQNATVANIPISFDLQRSETESLVLKTPVSMGFFNFTWR DLPEGEFPSSVGTLTVTPGLEYRIKTSDTHEFQTYADLGFGTNFTNSNDVIIYSAGMSSLLDFELGDSDPVWVNRIFFAG YSTLHDGSSETYSAVQSGVDIGTNLHFQLGGVDMEPRFFAAGYWYFDRLKFTTPFEEDVLVANSFEAGITLAFSKPIGWD LVNIDRFGISYRAGDGVEVWRLIFEFPL >Mature_267_residues ARLRYLSISPLLFILPAHSETDYSHYAFANYLGSGLYRTAGQNATVANIPISFDLQRSETESLVLKTPVSMGFFNFTWRD LPEGEFPSSVGTLTVTPGLEYRIKTSDTHEFQTYADLGFGTNFTNSNDVIIYSAGMSSLLDFELGDSDPVWVNRIFFAGY STLHDGSSETYSAVQSGVDIGTNLHFQLGGVDMEPRFFAAGYWYFDRLKFTTPFEEDVLVANSFEAGITLAFSKPIGWDL VNIDRFGISYRAGDGVEVWRLIFEFPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29987; Mature: 29856
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLRYLSISPLLFILPAHSETDYSHYAFANYLGSGLYRTAGQNATVANIPISFDLQRSE CCEEEEEEECCEEEEEECCCCCCCCHHHHHHHHCCCCEECCCCCCEEEECCEEEEECCCC TESLVLKTPVSMGFFNFTWRDLPEGEFPSSVGTLTVTPGLEYRIKTSDTHEFQTYADLGF CCEEEEECCCCCCEEECEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEEEEECCC GTNFTNSNDVIIYSAGMSSLLDFELGDSDPVWVNRIFFAGYSTLHDGSSETYSAVQSGVD CCCCCCCCCEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCEECCCCCHHHHHHHCCCC IGTNLHFQLGGVDMEPRFFAAGYWYFDRLKFTTPFEEDVLVANSFEAGITLAFSKPIGWD CCCEEEEEECCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCE LVNIDRFGISYRAGDGVEVWRLIFEFPL EEEEEECCEEEECCCCHHHHHHHHHCCC >Mature Secondary Structure ARLRYLSISPLLFILPAHSETDYSHYAFANYLGSGLYRTAGQNATVANIPISFDLQRSE CEEEEEEECCEEEEEECCCCCCCCHHHHHHHHCCCCEECCCCCCEEEECCEEEEECCCC TESLVLKTPVSMGFFNFTWRDLPEGEFPSSVGTLTVTPGLEYRIKTSDTHEFQTYADLGF CCEEEEECCCCCCEEECEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEEEEECCC GTNFTNSNDVIIYSAGMSSLLDFELGDSDPVWVNRIFFAGYSTLHDGSSETYSAVQSGVD CCCCCCCCCEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCEECCCCCHHHHHHHCCCC IGTNLHFQLGGVDMEPRFFAAGYWYFDRLKFTTPFEEDVLVANSFEAGITLAFSKPIGWD CCCEEEEEECCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCE LVNIDRFGISYRAGDGVEVWRLIFEFPL EEEEEECCEEEECCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA