| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624337
Identifier: 167624337
GI number: 167624337
Start: 2913231
End: 2914211
Strand: Reverse
Name: 167624337
Synonym: Shal_2414
Alternate gene names: NA
Gene position: 2914211-2913231 (Counterclockwise)
Preceding gene: 167624345
Following gene: 167624335
Centisome position: 55.75
GC content: 44.65
Gene sequence:
>981_bases ATGCCTACGCCAAGAAAGGCGTTAGTCAGCTTGGAAGATACCCCTTATTATCATTGCATAAGTCGTTGTGTTAGAAAGGC ATTCCTGTGTGGGGTTGATGTTCACACGGGACAATCCTATGAGCATAGGCGTGACTGGGTCGAAAGTCGGCTGTTGCAGC TAGCTGAAGTGTTCGCAATCGATATCTGTGCTTTTGCGGTGATGAGTAATCATCTGCACCTTGTATTGCGGGTTGATGCT GAGTTGGCTAAGAGCTGGTCAGATATCGAGGTTGTTTCTCAATGGCAAAAGCTGTTCAAAGGCGATAGCCTGAATCACGA TTTTATTAAAGCTGAACCTCTTGAATCTTATCAACAAACAATCATCAATAAGCGGATAAAAGAGTACCGACTTCGATTAA TGGATATCTCCTGGTTTATGCGGGCACTTAATGAACCCATTGCCAGAAAGGCTAATGCTGAAGATAAGTGTAAGGGGCGG TTTTGGGAGGGACGTTTTAAGTCCCAAGCGTTACTTGATGAAGCGGCAGTGTTGGCTTGTATGGCCTATATCGACCTGAA CCCTATCCGGGCCAATATTGCTACATCCCCAGACACCTCAGACTTCACCAGTATCCAAATGCGCATCAAAGCGGCAGTTA AAGGCGAACAACCTAAATCGCTACTCCCTTTTGTAGGCGATGAGCATAAAGATATGCCTAAAGGTCTCATGTTTAATGCA AAAGAATATCTACAACTAGTTGATGATACAGGTCGAATCCAACGTAATGATAAACGAGGTGCTATCAGCCAATCCTCACA GCAGTTGTTATACCGCTTAAACATTCCTGCTGAGAACTGGCTTAAAATGACCGCTGAGTTCACGAAAATCTTCAAAGGCG CAGTGGGCAATACTCAAGAATTATCGACGTATTGTGAACACCTAGAGCGTAAACGACGACAAGGTGCAGCCAATTGTCAC CGATGGCTAGATTGTAGTTAG
Upstream 100 bases:
>100_bases AGTAGCGAACCTCAGTAATGGAAATAACCAAGACACCCAAAATTGTTGGATAGCGATTCCTCTACTAGGCTTTAGTTAAG GTTGAACAGAGGAGTGTGTT
Downstream 100 bases:
>100_bases TTTACGTTAAACCTACTCACCCCTTTTTACGCTACCAGACTGATGTTTGGGCGTTTTTGCTGCGTGATTTTCATTTTAAT TGCTGATATTTTGCTCGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MPTPRKALVSLEDTPYYHCISRCVRKAFLCGVDVHTGQSYEHRRDWVESRLLQLAEVFAIDICAFAVMSNHLHLVLRVDA ELAKSWSDIEVVSQWQKLFKGDSLNHDFIKAEPLESYQQTIINKRIKEYRLRLMDISWFMRALNEPIARKANAEDKCKGR FWEGRFKSQALLDEAAVLACMAYIDLNPIRANIATSPDTSDFTSIQMRIKAAVKGEQPKSLLPFVGDEHKDMPKGLMFNA KEYLQLVDDTGRIQRNDKRGAISQSSQQLLYRLNIPAENWLKMTAEFTKIFKGAVGNTQELSTYCEHLERKRRQGAANCH RWLDCS
Sequences:
>Translated_326_residues MPTPRKALVSLEDTPYYHCISRCVRKAFLCGVDVHTGQSYEHRRDWVESRLLQLAEVFAIDICAFAVMSNHLHLVLRVDA ELAKSWSDIEVVSQWQKLFKGDSLNHDFIKAEPLESYQQTIINKRIKEYRLRLMDISWFMRALNEPIARKANAEDKCKGR FWEGRFKSQALLDEAAVLACMAYIDLNPIRANIATSPDTSDFTSIQMRIKAAVKGEQPKSLLPFVGDEHKDMPKGLMFNA KEYLQLVDDTGRIQRNDKRGAISQSSQQLLYRLNIPAENWLKMTAEFTKIFKGAVGNTQELSTYCEHLERKRRQGAANCH RWLDCS >Mature_325_residues PTPRKALVSLEDTPYYHCISRCVRKAFLCGVDVHTGQSYEHRRDWVESRLLQLAEVFAIDICAFAVMSNHLHLVLRVDAE LAKSWSDIEVVSQWQKLFKGDSLNHDFIKAEPLESYQQTIINKRIKEYRLRLMDISWFMRALNEPIARKANAEDKCKGRF WEGRFKSQALLDEAAVLACMAYIDLNPIRANIATSPDTSDFTSIQMRIKAAVKGEQPKSLLPFVGDEHKDMPKGLMFNAK EYLQLVDDTGRIQRNDKRGAISQSSQQLLYRLNIPAENWLKMTAEFTKIFKGAVGNTQELSTYCEHLERKRRQGAANCHR WLDCS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37561; Mature: 37429
Theoretical pI: Translated: 8.62; Mature: 8.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTPRKALVSLEDTPYYHCISRCVRKAFLCGVDVHTGQSYEHRRDWVESRLLQLAEVFAI CCCCHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DICAFAVMSNHLHLVLRVDAELAKSWSDIEVVSQWQKLFKGDSLNHDFIKAEPLESYQQT HHHHHHHHHCCEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH IINKRIKEYRLRLMDISWFMRALNEPIARKANAEDKCKGRFWEGRFKSQALLDEAAVLAC HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH MAYIDLNPIRANIATSPDTSDFTSIQMRIKAAVKGEQPKSLLPFVGDEHKDMPKGLMFNA HHHHCCCHHEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCH KEYLQLVDDTGRIQRNDKRGAISQSSQQLLYRLNIPAENWLKMTAEFTKIFKGAVGNTQE HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHCCCCCHHH LSTYCEHLERKRRQGAANCHRWLDCS HHHHHHHHHHHHHCCHHHHHHCCCCC >Mature Secondary Structure PTPRKALVSLEDTPYYHCISRCVRKAFLCGVDVHTGQSYEHRRDWVESRLLQLAEVFAI CCCHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DICAFAVMSNHLHLVLRVDAELAKSWSDIEVVSQWQKLFKGDSLNHDFIKAEPLESYQQT HHHHHHHHHCCEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH IINKRIKEYRLRLMDISWFMRALNEPIARKANAEDKCKGRFWEGRFKSQALLDEAAVLAC HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH MAYIDLNPIRANIATSPDTSDFTSIQMRIKAAVKGEQPKSLLPFVGDEHKDMPKGLMFNA HHHHCCCHHEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCH KEYLQLVDDTGRIQRNDKRGAISQSSQQLLYRLNIPAENWLKMTAEFTKIFKGAVGNTQE HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHCCCCCHHH LSTYCEHLERKRRQGAANCHRWLDCS HHHHHHHHHHHHHCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA