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The map label for this gene is ydaL [H]

Identifier: 167623873

GI number: 167623873

Start: 2335687

End: 2336277

Strand: Direct

Name: ydaL [H]

Synonym: Shal_1943

Alternate gene names: 167623873

Gene position: 2335687-2336277 (Clockwise)

Preceding gene: 167623870

Following gene: 167623875

Centisome position: 44.69

GC content: 46.7

Gene sequence:

>591_bases
ATGGGTGAAGAGGAAATGACCCTTTTTCTTCAAGAGATGAGTGGTGTTCAGCCCCTTAAGCATAATACCAATGCAACTAT
TGCTGAACAGACGGTATCGACACAGGCTCAAAATGCTCGGCGTAAACAGCTTGAAATGAGCGAGCAACTCGCTAAGTTAA
CGACCGACATCAATGCGATTGAGCCTATTGCATCAGACGCTATTATCGAATTTAAACGAGATGGTGTGCAAGATGCGGTA
TTTCAACGCTTCAGCCGTGGTGGCTACCCGATTAAACATGAGATCCTGCTGCATCAACTAAAAGTACAGCAGGCGCGGGA
AGCACTCTATAACGAGATCCAAAAGAGTCGACAAAAGGGCGAAAGAAGTATTCTGGTTATTCATGGTAAGGGGGTTAACA
GTAAACCTATCCCCGCGCTGATGAAATCCTTTGTGGCAAGCTGGCTTGAGCAGATCGATGAAGTGCTGGCATTTCATAGC
GCCCAGGTACACCACGGCGGCACGGGAGCTTTATATGTGATGCTGGCAAAATCGGAGCAGAAACGTATCGAAACCCAAGA
GAGCAACCATAAAGGTGTGAATATACGCTAA

Upstream 100 bases:

>100_bases
GTACTAGATCTTTACAAGATGTGTAGAGCTGTAAGTCAGTATCTACATCTTCACTCGCCTATTGAGTGTGATACGAGAAT
TAAAGCTAATGGGAGTACTT

Downstream 100 bases:

>100_bases
TCTTTTTCAGATTTTAAAAGGCCATCTTACCCTAGGCTAAGATGGCTTTTTGTTTTGTATCGCTAACTATTTCACACAGA
GACTTATGGAACTTGAGTTG

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MGEEEMTLFLQEMSGVQPLKHNTNATIAEQTVSTQAQNARRKQLEMSEQLAKLTTDINAIEPIASDAIIEFKRDGVQDAV
FQRFSRGGYPIKHEILLHQLKVQQAREALYNEIQKSRQKGERSILVIHGKGVNSKPIPALMKSFVASWLEQIDEVLAFHS
AQVHHGGTGALYVMLAKSEQKRIETQESNHKGVNIR

Sequences:

>Translated_196_residues
MGEEEMTLFLQEMSGVQPLKHNTNATIAEQTVSTQAQNARRKQLEMSEQLAKLTTDINAIEPIASDAIIEFKRDGVQDAV
FQRFSRGGYPIKHEILLHQLKVQQAREALYNEIQKSRQKGERSILVIHGKGVNSKPIPALMKSFVASWLEQIDEVLAFHS
AQVHHGGTGALYVMLAKSEQKRIETQESNHKGVNIR
>Mature_195_residues
GEEEMTLFLQEMSGVQPLKHNTNATIAEQTVSTQAQNARRKQLEMSEQLAKLTTDINAIEPIASDAIIEFKRDGVQDAVF
QRFSRGGYPIKHEILLHQLKVQQAREALYNEIQKSRQKGERSILVIHGKGVNSKPIPALMKSFVASWLEQIDEVLAFHSA
QVHHGGTGALYVMLAKSEQKRIETQESNHKGVNIR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=191, Percent_Identity=34.0314136125654, Blast_Score=111, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 22055; Mature: 21923

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEEEMTLFLQEMSGVQPLKHNTNATIAEQTVSTQAQNARRKQLEMSEQLAKLTTDINAI
CCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EPIASDAIIEFKRDGVQDAVFQRFSRGGYPIKHEILLHQLKVQQAREALYNEIQKSRQKG
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ERSILVIHGKGVNSKPIPALMKSFVASWLEQIDEVLAFHSAQVHHGGTGALYVMLAKSEQ
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHH
KRIETQESNHKGVNIR
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GEEEMTLFLQEMSGVQPLKHNTNATIAEQTVSTQAQNARRKQLEMSEQLAKLTTDINAI
CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EPIASDAIIEFKRDGVQDAVFQRFSRGGYPIKHEILLHQLKVQQAREALYNEIQKSRQKG
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ERSILVIHGKGVNSKPIPALMKSFVASWLEQIDEVLAFHSAQVHHGGTGALYVMLAKSEQ
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHH
KRIETQESNHKGVNIR
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]