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The map label for this gene is yciR [C]

Identifier: 167623870

GI number: 167623870

Start: 2332279

End: 2334453

Strand: Direct

Name: yciR [C]

Synonym: Shal_1940

Alternate gene names: 167623870

Gene position: 2332279-2334453 (Clockwise)

Preceding gene: 167623869

Following gene: 167623873

Centisome position: 44.62

GC content: 43.49

Gene sequence:

>2175_bases
GTGAAGAAGCATCAATTTCAGCAATTGTTGGAGTACATTGTTAATTCAGAAGCAAAGCAGTTAGGCGATTTTAAAGCGAC
TGCGCAAATTGCAGCTGAATTGCTCTCTCAGCAGATTAATGTTTCAAGTGTCGTGGTTTCTGCGTTATCAGCAGAAACCA
ATACATTAGAGCAAATTACACGCTTATGCTTGGGCGTTAATACATCTTCTGCCAGCGTTATTCGTCCAAATCCCGGATCT
TGTACCAACTTTATTCACCAACTCAAAGATGAACGCCATATTTCTGCTGAGTTCTGTGGTGACGATAGTCGTCTAGTCGA
GCTTAAACCGTATTACCAGGCGCTGGGGATTATATCGGTTTTGGAAGTGGCTATTCGAATCAACGGGCATCTAGAGGGCA
TTTTAAGTCTAGAGCGCACCGAAGCGACAGAGCCATGGCACGATAGTGAAGTGCAACTTTGCTCACAAGTCGCAGATCAG
CTCGCATTAACCCTAGCAACGCAATATGGCTATGAAAAAGATGAACGACTAACGCTATTTTTATCTGCTGCAGAGCAGTC
AGATCAAATTATGATGGTGGTTAATCTAGCTTCAGACTGTATTGAGTACGTTAATAAGGCGCACGCGGATTTAACTAAGG
TACCTAGGGAACGAGTATTAGGACGACAGGTACAATCTCTAGATTTTTTTAGACAGTATCCTACGTTGGCAGCGCTTGTG
TTAAAGAAGGCTCGCATTGGAGAGACCTCTGAAGAAGAGGTAAACCTCGTTCGTCATGATGGTTCACCCTATTGGATGCG
TTTCTCTGTAAAACGTTTTATCTCCGAACGAGGTAATCATTTCGCATTAGTTAATGCTGAAGACTGCACAGAACAGCACA
ATCATCAAAGTGAATTATTACGTTTAGCATGGCGCTGTGGGCTGACAGGCTTGTATAACCGCACTCACTTTAGCCAAGTG
CTAGAGAAGGCACAGAAAGGGCACTTAGTGCTTATCGATCTACGTGAGTTTAAGCGCTTCAACGATACTTATGGTCACGC
CAACGGCGATATCATGTTAATTGAAGTCGCGAGACGAATGCGCCATTTTGCTGAAGCTCACCAGATCTCAGAAGTCGCAC
GGATAGGTAGCGATGAGTTTGGTATTTTATTTGAAAATGAAGAAGATGAAATATTCATTGAGCATGCAACCGAACGATTA
TATAAACAGCTTGAAGTCCCTATAACCATAGGTATTGAGCAGATAGAGCCTAAACCAGCCCTAGCTCGGGTCGACCTCGC
GTCAATAGAGCAACAATTCTCCCTCCTAACTTGTGCCGATATCGCACTTCAATACGCCAAAAATAAGCAGGGTAATGCCA
TTCAGGTATTTAACTCGGCGTTGCTTAATGCGTTTAAGGAAGATGCACAAATCGAAAGGGATTTGGCTGTTGCGATAAAA
GGCCGACAATTTGAACTCTACTATCAACCGTTAAAAGACTTAAAGAAACAGTCCTATATCGGTGCTGAAGCATTAATTCG
TTGGCACCATCCAAAGAAAGGGGTGCTTTATCCTGGGGCTTTTATTGATATTGCAGAGCAAACAGGACTGATTAATGATA
TCGGCTCGTGGGTGTTAGAGGCGGCGTGTAAACAACTTAACCTATGGCAACGGCATCAGATTGATATTTCGATGCACGTG
AATGTATCTGCGAGGCAATTTTTTAGTGGTACCCTATTTGAGCAGGTGTGGGAACTCGTCACTCGATACCGCTTAAAACC
CCATAGTTTGATCCTTGAAATAACCGAAACAGAGTTAATGGAAGATATTCGCTCTGCGACCAATTTGTGTCATGAGCTGG
CCGCCCTAGGTGTTGGGCTCGCTATCGATGATTTTGGTACCGGTTATAGTTCTATGCGATACCTGAAGCAATTTCCTATT
AGTAAACTAAAAATTGACCGCTCTTTTATATCTGACCTGTCAGTGAGCCATGAAAGTCGTGAAATTGTCAGTGCGATAAT
TGCTATGGCGTCGGCATTAAATATTTCGCTTACCGCAGAAGGGGTGGAAACGAAAGAGCAGGAGCATTTTTTAGCCGAGC
ACTCGTGTCACCAAGCGCAGGGCTTCTTATACAGCCCAGCGTTAAGAGTCTCTGAATTTGGCCAATTCTTAGAAAAATCA
GCCTCAATTCATTAA

Upstream 100 bases:

>100_bases
TAGATTAACTCGTGTAGCCTTGTACCCTATAAAAATATAATTTTTGCTTTAATTTTTAAAGCCATTGGTAGACGCTTTGT
TTACCTCATTAGGATAACGT

Downstream 100 bases:

>100_bases
GAGTGGGTTACTTACCGCAGCACTGCTTAAATTTCTTACCACTGTGGCAGATACACTTATCATTTCGCTTAGGAAAGACC
GCAGCTTTTTGCTCACCTTG

Product: PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 724; Mature: 724

Protein sequence:

>724_residues
MKKHQFQQLLEYIVNSEAKQLGDFKATAQIAAELLSQQINVSSVVVSALSAETNTLEQITRLCLGVNTSSASVIRPNPGS
CTNFIHQLKDERHISAEFCGDDSRLVELKPYYQALGIISVLEVAIRINGHLEGILSLERTEATEPWHDSEVQLCSQVADQ
LALTLATQYGYEKDERLTLFLSAAEQSDQIMMVVNLASDCIEYVNKAHADLTKVPRERVLGRQVQSLDFFRQYPTLAALV
LKKARIGETSEEEVNLVRHDGSPYWMRFSVKRFISERGNHFALVNAEDCTEQHNHQSELLRLAWRCGLTGLYNRTHFSQV
LEKAQKGHLVLIDLREFKRFNDTYGHANGDIMLIEVARRMRHFAEAHQISEVARIGSDEFGILFENEEDEIFIEHATERL
YKQLEVPITIGIEQIEPKPALARVDLASIEQQFSLLTCADIALQYAKNKQGNAIQVFNSALLNAFKEDAQIERDLAVAIK
GRQFELYYQPLKDLKKQSYIGAEALIRWHHPKKGVLYPGAFIDIAEQTGLINDIGSWVLEAACKQLNLWQRHQIDISMHV
NVSARQFFSGTLFEQVWELVTRYRLKPHSLILEITETELMEDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLKQFPI
SKLKIDRSFISDLSVSHESREIVSAIIAMASALNISLTAEGVETKEQEHFLAEHSCHQAQGFLYSPALRVSEFGQFLEKS
ASIH

Sequences:

>Translated_724_residues
MKKHQFQQLLEYIVNSEAKQLGDFKATAQIAAELLSQQINVSSVVVSALSAETNTLEQITRLCLGVNTSSASVIRPNPGS
CTNFIHQLKDERHISAEFCGDDSRLVELKPYYQALGIISVLEVAIRINGHLEGILSLERTEATEPWHDSEVQLCSQVADQ
LALTLATQYGYEKDERLTLFLSAAEQSDQIMMVVNLASDCIEYVNKAHADLTKVPRERVLGRQVQSLDFFRQYPTLAALV
LKKARIGETSEEEVNLVRHDGSPYWMRFSVKRFISERGNHFALVNAEDCTEQHNHQSELLRLAWRCGLTGLYNRTHFSQV
LEKAQKGHLVLIDLREFKRFNDTYGHANGDIMLIEVARRMRHFAEAHQISEVARIGSDEFGILFENEEDEIFIEHATERL
YKQLEVPITIGIEQIEPKPALARVDLASIEQQFSLLTCADIALQYAKNKQGNAIQVFNSALLNAFKEDAQIERDLAVAIK
GRQFELYYQPLKDLKKQSYIGAEALIRWHHPKKGVLYPGAFIDIAEQTGLINDIGSWVLEAACKQLNLWQRHQIDISMHV
NVSARQFFSGTLFEQVWELVTRYRLKPHSLILEITETELMEDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLKQFPI
SKLKIDRSFISDLSVSHESREIVSAIIAMASALNISLTAEGVETKEQEHFLAEHSCHQAQGFLYSPALRVSEFGQFLEKS
ASIH
>Mature_724_residues
MKKHQFQQLLEYIVNSEAKQLGDFKATAQIAAELLSQQINVSSVVVSALSAETNTLEQITRLCLGVNTSSASVIRPNPGS
CTNFIHQLKDERHISAEFCGDDSRLVELKPYYQALGIISVLEVAIRINGHLEGILSLERTEATEPWHDSEVQLCSQVADQ
LALTLATQYGYEKDERLTLFLSAAEQSDQIMMVVNLASDCIEYVNKAHADLTKVPRERVLGRQVQSLDFFRQYPTLAALV
LKKARIGETSEEEVNLVRHDGSPYWMRFSVKRFISERGNHFALVNAEDCTEQHNHQSELLRLAWRCGLTGLYNRTHFSQV
LEKAQKGHLVLIDLREFKRFNDTYGHANGDIMLIEVARRMRHFAEAHQISEVARIGSDEFGILFENEEDEIFIEHATERL
YKQLEVPITIGIEQIEPKPALARVDLASIEQQFSLLTCADIALQYAKNKQGNAIQVFNSALLNAFKEDAQIERDLAVAIK
GRQFELYYQPLKDLKKQSYIGAEALIRWHHPKKGVLYPGAFIDIAEQTGLINDIGSWVLEAACKQLNLWQRHQIDISMHV
NVSARQFFSGTLFEQVWELVTRYRLKPHSLILEITETELMEDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLKQFPI
SKLKIDRSFISDLSVSHESREIVSAIIAMASALNISLTAEGVETKEQEHFLAEHSCHQAQGFLYSPALRVSEFGQFLEKS
ASIH

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=446, Percent_Identity=30.2690582959641, Blast_Score=216, Evalue=5e-57,
Organism=Escherichia coli, GI87081921, Length=417, Percent_Identity=32.3741007194245, Blast_Score=200, Evalue=3e-52,
Organism=Escherichia coli, GI226510982, Length=426, Percent_Identity=30.0469483568075, Blast_Score=185, Evalue=1e-47,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=33.0645161290323, Blast_Score=148, Evalue=9e-37,
Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=35.2941176470588, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=32.6446280991736, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=32.9317269076305, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1786507, Length=241, Percent_Identity=32.7800829875519, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081845, Length=261, Percent_Identity=31.8007662835249, Blast_Score=134, Evalue=3e-32,
Organism=Escherichia coli, GI1787055, Length=262, Percent_Identity=32.824427480916, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788849, Length=242, Percent_Identity=27.6859504132231, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082096, Length=218, Percent_Identity=29.8165137614679, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787410, Length=123, Percent_Identity=30.8943089430894, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786584, Length=194, Percent_Identity=25.7731958762887, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 81933; Mature: 81933

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS50113 PAC ; PS00639 THIOL_PROTEASE_HIS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHQFQQLLEYIVNSEAKQLGDFKATAQIAAELLSQQINVSSVVVSALSAETNTLEQIT
CCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHH
RLCLGVNTSSASVIRPNPGSCTNFIHQLKDERHISAEFCGDDSRLVELKPYYQALGIISV
HHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCHHCCCCCCCEEEECHHHHHHHHHHH
LEVAIRINGHLEGILSLERTEATEPWHDSEVQLCSQVADQLALTLATQYGYEKDERLTLF
HHHHHHHCCCHHHHHEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
LSAAEQSDQIMMVVNLASDCIEYVNKAHADLTKVPRERVLGRQVQSLDFFRQYPTLAALV
EEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKKARIGETSEEEVNLVRHDGSPYWMRFSVKRFISERGNHFALVNAEDCTEQHNHQSELL
HHHHHCCCCCHHHHHHEEECCCCEEEHHHHHHHHHCCCCEEEEEEHHHHHHHHCCHHHHH
RLAWRCGLTGLYNRTHFSQVLEKAQKGHLVLIDLREFKRFNDTYGHANGDIMLIEVARRM
HHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCCEEHHHHHHHH
RHFAEAHQISEVARIGSDEFGILFENEEDEIFIEHATERLYKQLEVPITIGIEQIEPKPA
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCEEECHHHCCCCCC
LARVDLASIEQQFSLLTCADIALQYAKNKQGNAIQVFNSALLNAFKEDAQIERDLAVAIK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEE
GRQFELYYQPLKDLKKQSYIGAEALIRWHHPKKGVLYPGAFIDIAEQTGLINDIGSWVLE
CCEEEEHHHHHHHHHHHHCCCHHHHHEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
AACKQLNLWQRHQIDISMHVNVSARQFFSGTLFEQVWELVTRYRLKPHSLILEITETELM
HHHHHCCCHHHEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEHHHHHH
EDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLSVSHESR
HHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHH
EIVSAIIAMASALNISLTAEGVETKEQEHFLAEHSCHQAQGFLYSPALRVSEFGQFLEKS
HHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHH
ASIH
CCCC
>Mature Secondary Structure
MKKHQFQQLLEYIVNSEAKQLGDFKATAQIAAELLSQQINVSSVVVSALSAETNTLEQIT
CCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHH
RLCLGVNTSSASVIRPNPGSCTNFIHQLKDERHISAEFCGDDSRLVELKPYYQALGIISV
HHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCHHCCCCCCCEEEECHHHHHHHHHHH
LEVAIRINGHLEGILSLERTEATEPWHDSEVQLCSQVADQLALTLATQYGYEKDERLTLF
HHHHHHHCCCHHHHHEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
LSAAEQSDQIMMVVNLASDCIEYVNKAHADLTKVPRERVLGRQVQSLDFFRQYPTLAALV
EEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKKARIGETSEEEVNLVRHDGSPYWMRFSVKRFISERGNHFALVNAEDCTEQHNHQSELL
HHHHHCCCCCHHHHHHEEECCCCEEEHHHHHHHHHCCCCEEEEEEHHHHHHHHCCHHHHH
RLAWRCGLTGLYNRTHFSQVLEKAQKGHLVLIDLREFKRFNDTYGHANGDIMLIEVARRM
HHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCCEEHHHHHHHH
RHFAEAHQISEVARIGSDEFGILFENEEDEIFIEHATERLYKQLEVPITIGIEQIEPKPA
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCEEECHHHCCCCCC
LARVDLASIEQQFSLLTCADIALQYAKNKQGNAIQVFNSALLNAFKEDAQIERDLAVAIK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEE
GRQFELYYQPLKDLKKQSYIGAEALIRWHHPKKGVLYPGAFIDIAEQTGLINDIGSWVLE
CCEEEEHHHHHHHHHHHHCCCHHHHHEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
AACKQLNLWQRHQIDISMHVNVSARQFFSGTLFEQVWELVTRYRLKPHSLILEITETELM
HHHHHCCCHHHEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEHHHHHH
EDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLSVSHESR
HHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHH
EIVSAIIAMASALNISLTAEGVETKEQEHFLAEHSCHQAQGFLYSPALRVSEFGQFLEKS
HHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHH
ASIH
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]