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The map label for this gene is yqfA [H]

Identifier: 167623828

GI number: 167623828

Start: 2280483

End: 2281181

Strand: Reverse

Name: yqfA [H]

Synonym: Shal_1898

Alternate gene names: 167623828

Gene position: 2281181-2280483 (Counterclockwise)

Preceding gene: 167623837

Following gene: 167623825

Centisome position: 43.64

GC content: 44.35

Gene sequence:

>699_bases
ATGATGCCAGTAGAACAAGCGACAGCTTCAGACAATCAAGGCTCTAAGCCAACAAATAAGCAGATAACGTCTGCAAGCTA
CTGCGCGAATGAAGAGCGAGCCAATAGCATTAGCCACGGTATTGGCGTGTTTGCCGGGATCGTTGGACTGATTTTATGTC
TGCTTAAAGGCTATGATCACTTAAGTTTGATTCAGTTAACAGGCGTGGTGGTGTACTGTTGCAGTATTATTTTGCTGTTT
CTTTGCTCAACGCTTTACCACAGCGCGACCTCTCCCTTGCTAAAACACCGACTTAAGATAGCCGATCACTGCGCCATCTA
CCTGTTAATTGCCGGCACTTATACCCCGCTAATGCTGGTCACACTAGATAGCAGCGATGCCAATTGGGTGTTAATCGCTA
TTTGGTCACTGGCTATCGGTGGCATTTTATTTAAGACGCTATTTATTGGGCGCTTTAAAGCATTCAGCTTAGTTCTGTAT
CTAGTCATGGGTTGGCTATGTGTGACAGTAATGCAAGAGTTAATCGCCAATATGTCTGATTTGGGCTTTAATCTATTACT
TATCGGTGGCCTGTTTTACAGCCTTGGTGTTATTTTTTACGTGGCTAAACGTATTCCCTTTAACCACGCTATCTGGCACC
TATTCGTGCTAGGCGGCGCAGTGTCTCACTTCTTATGTATCTACCTAACGGTCATTTAA

Upstream 100 bases:

>100_bases
AAGAAATAAGTTAAGCGTACACGTGTGCGCTTAACTTATAGCTTTTCAAATCAAAAATGTTACACTGACGCTAATTGTGG
TCAAACCAAAAGTCTTTTAT

Downstream 100 bases:

>100_bases
AATAAAAGACCCCTGAGTCAATGCCGTTAAGTTAAGCCAAAATCTGATTAATAAGTAAAGAACCCAGCCTAAGCTGGGTT
CTTTGTTTTAAAAACTATAA

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MMPVEQATASDNQGSKPTNKQITSASYCANEERANSISHGIGVFAGIVGLILCLLKGYDHLSLIQLTGVVVYCCSIILLF
LCSTLYHSATSPLLKHRLKIADHCAIYLLIAGTYTPLMLVTLDSSDANWVLIAIWSLAIGGILFKTLFIGRFKAFSLVLY
LVMGWLCVTVMQELIANMSDLGFNLLLIGGLFYSLGVIFYVAKRIPFNHAIWHLFVLGGAVSHFLCIYLTVI

Sequences:

>Translated_232_residues
MMPVEQATASDNQGSKPTNKQITSASYCANEERANSISHGIGVFAGIVGLILCLLKGYDHLSLIQLTGVVVYCCSIILLF
LCSTLYHSATSPLLKHRLKIADHCAIYLLIAGTYTPLMLVTLDSSDANWVLIAIWSLAIGGILFKTLFIGRFKAFSLVLY
LVMGWLCVTVMQELIANMSDLGFNLLLIGGLFYSLGVIFYVAKRIPFNHAIWHLFVLGGAVSHFLCIYLTVI
>Mature_232_residues
MMPVEQATASDNQGSKPTNKQITSASYCANEERANSISHGIGVFAGIVGLILCLLKGYDHLSLIQLTGVVVYCCSIILLF
LCSTLYHSATSPLLKHRLKIADHCAIYLLIAGTYTPLMLVTLDSSDANWVLIAIWSLAIGGILFKTLFIGRFKAFSLVLY
LVMGWLCVTVMQELIANMSDLGFNLLLIGGLFYSLGVIFYVAKRIPFNHAIWHLFVLGGAVSHFLCIYLTVI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=220, Percent_Identity=29.5454545454545, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI52630445, Length=220, Percent_Identity=31.3636363636364, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI154759277, Length=244, Percent_Identity=26.6393442622951, Blast_Score=75, Evalue=7e-14,
Organism=Escherichia coli, GI1789266, Length=218, Percent_Identity=55.5045871559633, Blast_Score=213, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI71996356, Length=215, Percent_Identity=33.953488372093, Blast_Score=91, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24640324, Length=226, Percent_Identity=31.858407079646, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 25442; Mature: 25442

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPVEQATASDNQGSKPTNKQITSASYCANEERANSISHGIGVFAGIVGLILCLLKGYDH
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LSLIQLTGVVVYCCSIILLFLCSTLYHSATSPLLKHRLKIADHCAIYLLIAGTYTPLMLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
TLDSSDANWVLIAIWSLAIGGILFKTLFIGRFKAFSLVLYLVMGWLCVTVMQELIANMSD
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGFNLLLIGGLFYSLGVIFYVAKRIPFNHAIWHLFVLGGAVSHFLCIYLTVI
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MMPVEQATASDNQGSKPTNKQITSASYCANEERANSISHGIGVFAGIVGLILCLLKGYDH
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LSLIQLTGVVVYCCSIILLFLCSTLYHSATSPLLKHRLKIADHCAIYLLIAGTYTPLMLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
TLDSSDANWVLIAIWSLAIGGILFKTLFIGRFKAFSLVLYLVMGWLCVTVMQELIANMSD
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGFNLLLIGGLFYSLGVIFYVAKRIPFNHAIWHLFVLGGAVSHFLCIYLTVI
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]