| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623328
Identifier: 167623328
GI number: 167623328
Start: 1687760
End: 1688740
Strand: Direct
Name: 167623328
Synonym: Shal_1397
Alternate gene names: NA
Gene position: 1687760-1688740 (Clockwise)
Preceding gene: 167623325
Following gene: 167623329
Centisome position: 32.29
GC content: 42.51
Gene sequence:
>981_bases ATGACTGTTCAACATGTGATGTTTCGCTGTGATGCATCAATCCAAGTCGGAATGGGTCATATCGTACGCTGTATCTGTTT AGCCAATGCCTTTATCGAAGCCGGTCACCGGGTTACTTTTGTCATTAATAATGACGTCATTGCTATACAGGCTCTGGCAG GACTTAACCTTGATATGCAGCTGTTTAAGCAGGCTGACTATTTAGAATGGTGTCAGCAGGTCATCGAACAACAGCGCCCC GATATATTTATCGGTGATATCCGAGATGGTCTACCAATACAGGCGGTTGAGATGATGAAACAGGCTAATATCTTGACCGT CGCAATCGACGAGCCTAGTGATTACCGTTTAGCTTGTGATTTACTGTTTTATCCACCGAGCCCGTTGGTTGAGGCGTTAA ATTGGCAGGGCTTTAATGGCAAAAGGTATGCTGGTTGGGAATACTTGCTCGTAAGGGAGGAGTTTTATACACCATTTGTG AAGTCTTGTAATCAGCCACAGAAGGTGCTGGTTATGATGGGAGGGACAGATCCCCAGCGTTTAACTTTAACCGTTATTGA GCATTTTCGTCGATTAGATAGCCAGTTAGCCCTACATGTCGTTATTAAAGAGAGACATCCCGATTTTGCTCAATTGAGTA GACAACAAGGGCAGTCTGTAAATTTAACCCTGCATTCCAACCCCGCAAATATAGCAAAGCTAATGCGGCAGATGGATTTT GCCGTTATTACTTTTGGTATGAGCGCATACGAACTTGCTGTGCTAAAAGTACCAGCATTTCATATTTGTACCCAGCCTGA TCATCACATTGCTAGCCAAAGCTTTGTTGACAAACAGATTGCCAAGTCGATTGGTGTCACTGAATTGGACAAAATTTGTT TATTCGATTCTAAAGGTTGCTCAATTTCGAGTGGTATCGATAATATTATGAGTAAAATACTCGCGGCTCGATTTGTGCAA GTAAATGATTATCCTTCTTAA
Upstream 100 bases:
>100_bases ATTCAGTCGTAAGCAGATGACTCCTTTATTTTCGAGTGCTTTGTTTTAACCTGACGGGCGGCATTTAACCTATGGGTACG AATATGAGTACTAAAACAAT
Downstream 100 bases:
>100_bases TGCTAATGGTTTAGTCAATATGCCTCTCGCACTACTTTTAGTATTTTTTTATCGTCAAAATTTTATCGGTATGCATTTTG CTTGTCACAGCTAATAATGC
Product: acylneuraminate cytidylyltransferase
Products: NA
Alternate protein names: Acylneuraminate Cytidylyltransferase; Polysaccharide Biosynthesis Protein Glycosyltransferase; CMP-N-Acetylneuraminic Acid Synthetase NeuA; Cytidylyltransferase Domain Protein; CMP-N-Acetylneuraminic Acid Synthetase; Glycosyltransferase
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MTVQHVMFRCDASIQVGMGHIVRCICLANAFIEAGHRVTFVINNDVIAIQALAGLNLDMQLFKQADYLEWCQQVIEQQRP DIFIGDIRDGLPIQAVEMMKQANILTVAIDEPSDYRLACDLLFYPPSPLVEALNWQGFNGKRYAGWEYLLVREEFYTPFV KSCNQPQKVLVMMGGTDPQRLTLTVIEHFRRLDSQLALHVVIKERHPDFAQLSRQQGQSVNLTLHSNPANIAKLMRQMDF AVITFGMSAYELAVLKVPAFHICTQPDHHIASQSFVDKQIAKSIGVTELDKICLFDSKGCSISSGIDNIMSKILAARFVQ VNDYPS
Sequences:
>Translated_326_residues MTVQHVMFRCDASIQVGMGHIVRCICLANAFIEAGHRVTFVINNDVIAIQALAGLNLDMQLFKQADYLEWCQQVIEQQRP DIFIGDIRDGLPIQAVEMMKQANILTVAIDEPSDYRLACDLLFYPPSPLVEALNWQGFNGKRYAGWEYLLVREEFYTPFV KSCNQPQKVLVMMGGTDPQRLTLTVIEHFRRLDSQLALHVVIKERHPDFAQLSRQQGQSVNLTLHSNPANIAKLMRQMDF AVITFGMSAYELAVLKVPAFHICTQPDHHIASQSFVDKQIAKSIGVTELDKICLFDSKGCSISSGIDNIMSKILAARFVQ VNDYPS >Mature_325_residues TVQHVMFRCDASIQVGMGHIVRCICLANAFIEAGHRVTFVINNDVIAIQALAGLNLDMQLFKQADYLEWCQQVIEQQRPD IFIGDIRDGLPIQAVEMMKQANILTVAIDEPSDYRLACDLLFYPPSPLVEALNWQGFNGKRYAGWEYLLVREEFYTPFVK SCNQPQKVLVMMGGTDPQRLTLTVIEHFRRLDSQLALHVVIKERHPDFAQLSRQQGQSVNLTLHSNPANIAKLMRQMDFA VITFGMSAYELAVLKVPAFHICTQPDHHIASQSFVDKQIAKSIGVTELDKICLFDSKGCSISSGIDNIMSKILAARFVQV NDYPS
Specific function: Unknown
COG id: COG3980
COG function: function code M; Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36762; Mature: 36631
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVQHVMFRCDASIQVGMGHIVRCICLANAFIEAGHRVTFVINNDVIAIQALAGLNLDMQ CCHHHEEEEECCCEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCCCHH LFKQADYLEWCQQVIEQQRPDIFIGDIRDGLPIQAVEMMKQANILTVAIDEPSDYRLACD HHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEEEECCCCCCEEEEE LLFYPPSPLVEALNWQGFNGKRYAGWEYLLVREEFYTPFVKSCNQPQKVLVMMGGTDPQR EEECCCCHHHHHHCCCCCCCCEECCEEEEEEEHHHCCHHHHCCCCCCEEEEEECCCCCHH LTLTVIEHFRRLDSQLALHVVIKERHPDFAQLSRQQGQSVNLTLHSNPANIAKLMRQMDF HHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCC AVITFGMSAYELAVLKVPAFHICTQPDHHIASQSFVDKQIAKSIGVTELDKICLFDSKGC EEEEECCCHHEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCC SISSGIDNIMSKILAARFVQVNDYPS CCHHHHHHHHHHHHHHHHEEECCCCC >Mature Secondary Structure TVQHVMFRCDASIQVGMGHIVRCICLANAFIEAGHRVTFVINNDVIAIQALAGLNLDMQ CHHHEEEEECCCEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCCCHH LFKQADYLEWCQQVIEQQRPDIFIGDIRDGLPIQAVEMMKQANILTVAIDEPSDYRLACD HHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEEEECCCCCCEEEEE LLFYPPSPLVEALNWQGFNGKRYAGWEYLLVREEFYTPFVKSCNQPQKVLVMMGGTDPQR EEECCCCHHHHHHCCCCCCCCEECCEEEEEEEHHHCCHHHHCCCCCCEEEEEECCCCCHH LTLTVIEHFRRLDSQLALHVVIKERHPDFAQLSRQQGQSVNLTLHSNPANIAKLMRQMDF HHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCC AVITFGMSAYELAVLKVPAFHICTQPDHHIASQSFVDKQIAKSIGVTELDKICLFDSKGC EEEEECCCHHEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCC SISSGIDNIMSKILAARFVQVNDYPS CCHHHHHHHHHHHHHHHHEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA