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The map label for this gene is yfbE [C]

Identifier: 167623325

GI number: 167623325

Start: 1683054

End: 1684202

Strand: Direct

Name: yfbE [C]

Synonym: Shal_1394

Alternate gene names: 167623325

Gene position: 1683054-1684202 (Clockwise)

Preceding gene: 167623324

Following gene: 167623328

Centisome position: 32.2

GC content: 43.69

Gene sequence:

>1149_bases
ATGATCCAATACGGGAAACAACATATTTGCCAAGATGATATCGATGCTGTCGTGAATGTGTTGCAGTCTGACTTTTTGAC
CCAAGGACCGCAAGTTCCATTATTTGAGTCGCGGTTATGTCAGTTTACTCAAGCCCAACATGCGGTAGCGGTTAATAGCG
CGACCTCAGCGCTCCATATTGCCAGCTTAGCCCTTGGTGTTGATAAAGGGGATATTGTTTGGACTAGCCCTATTACATTT
GTAGCCTCATCTAACAGTGCGCTGTACTGTGGCGCAGTTGTAGACTTTGTCGATGTTGAGTTGGCAACGGGTAACATGGA
TATGGCTAAGTTGCGTCTCAAGCTAGTCGATGCTAAGAGGAAAGGTTTGTTACCCAAGGTGGTGATCCCAGTTCATTTAG
CTGGGCACTGCTGTGATATGAAGTCTTTGGCGCAGTTGGCGGAAGAGTATGGTTTTAAAGTGATTGAAGATGCGTCTCAC
TGTATCGGTGCTAGCTATGACGACAGTCCCGTTGGTAGCTGTCAATACAGTGACATTACAGTATTTAGTTTTCATCCGGT
AAAAATAATCACCACAGCGGAAGGCGGAGCGGCTACAACCAATGATGCTGTTTTAGCTAAGTCTATGCAGTTACTGCGTA
GTCACGGCGTGACTCGTGACGAATTACATACAGAGCATAGTGATGAGCCTTGGTACTACGAGCAACAAGTATTAGGCTTT
AATTACCGAATGACGGAGCTTCAGGCTGCGTTAGGAGTCAGTCAGTTTAAACAATTGACACAGTTAGTCAGCCGTAGAAA
TATCCTTGCAGACTATTACTCTGAGCGATTAAAAACGCTAAATATTGATTTTGTAGCACCCTGTGAAGACAGTTATAGCG
CTTGGCATTTGATGATAATCTTATTACCAAAGGACATTGATAGAAAAGCTATTTTCGATCAGTTACGAGAGGCGGGTATT
GGCGTTAATGTACATTACATACCTGTGCATACTCAGCCTTATTATGGCCAATTGGGCTTTAAAGTGGGCGACTTCCCTGC
ATCTGAGGCATTCTATCAACGCATTATTACTTTGCCATTACACCCACAACTAGAGTTCGCTCAACTCGATTATATTTGTG
AGCAGCTTAAGTCTTTTATACCTCGATAA

Upstream 100 bases:

>100_bases
AAGGTCAACTTGTTGAGTTAGGTTACGAATATCACTCTGGTAATAATCCCCATTTCCTTAGTCCGGATGAAATTCTCGCT
TTGGATGAGAGCCTAGGTTT

Downstream 100 bases:

>100_bases
ACTAGGCTCAGAGGCGTTAATAGCGGCGATCACTGATAGCCGCTATCTTATTAAACTCGTTATGAGTTGTCTGAGTGCAT
TTAGTGTCAACTCATTAATT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MIQYGKQHICQDDIDAVVNVLQSDFLTQGPQVPLFESRLCQFTQAQHAVAVNSATSALHIASLALGVDKGDIVWTSPITF
VASSNSALYCGAVVDFVDVELATGNMDMAKLRLKLVDAKRKGLLPKVVIPVHLAGHCCDMKSLAQLAEEYGFKVIEDASH
CIGASYDDSPVGSCQYSDITVFSFHPVKIITTAEGGAATTNDAVLAKSMQLLRSHGVTRDELHTEHSDEPWYYEQQVLGF
NYRMTELQAALGVSQFKQLTQLVSRRNILADYYSERLKTLNIDFVAPCEDSYSAWHLMIILLPKDIDRKAIFDQLREAGI
GVNVHYIPVHTQPYYGQLGFKVGDFPASEAFYQRIITLPLHPQLEFAQLDYICEQLKSFIPR

Sequences:

>Translated_382_residues
MIQYGKQHICQDDIDAVVNVLQSDFLTQGPQVPLFESRLCQFTQAQHAVAVNSATSALHIASLALGVDKGDIVWTSPITF
VASSNSALYCGAVVDFVDVELATGNMDMAKLRLKLVDAKRKGLLPKVVIPVHLAGHCCDMKSLAQLAEEYGFKVIEDASH
CIGASYDDSPVGSCQYSDITVFSFHPVKIITTAEGGAATTNDAVLAKSMQLLRSHGVTRDELHTEHSDEPWYYEQQVLGF
NYRMTELQAALGVSQFKQLTQLVSRRNILADYYSERLKTLNIDFVAPCEDSYSAWHLMIILLPKDIDRKAIFDQLREAGI
GVNVHYIPVHTQPYYGQLGFKVGDFPASEAFYQRIITLPLHPQLEFAQLDYICEQLKSFIPR
>Mature_382_residues
MIQYGKQHICQDDIDAVVNVLQSDFLTQGPQVPLFESRLCQFTQAQHAVAVNSATSALHIASLALGVDKGDIVWTSPITF
VASSNSALYCGAVVDFVDVELATGNMDMAKLRLKLVDAKRKGLLPKVVIPVHLAGHCCDMKSLAQLAEEYGFKVIEDASH
CIGASYDDSPVGSCQYSDITVFSFHPVKIITTAEGGAATTNDAVLAKSMQLLRSHGVTRDELHTEHSDEPWYYEQQVLGF
NYRMTELQAALGVSQFKQLTQLVSRRNILADYYSERLKTLNIDFVAPCEDSYSAWHLMIILLPKDIDRKAIFDQLREAGI
GVNVHYIPVHTQPYYGQLGFKVGDFPASEAFYQRIITLPLHPQLEFAQLDYICEQLKSFIPR

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=384, Percent_Identity=32.8125, Blast_Score=198, Evalue=5e-52,
Organism=Escherichia coli, GI2367285, Length=317, Percent_Identity=30.2839116719243, Blast_Score=133, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42538; Mature: 42538

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQYGKQHICQDDIDAVVNVLQSDFLTQGPQVPLFESRLCQFTQAQHAVAVNSATSALHI
CCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEEECCCHHHHHH
ASLALGVDKGDIVWTSPITFVASSNSALYCGAVVDFVDVELATGNMDMAKLRLKLVDAKR
HHHHEECCCCCEEEECCEEEEECCCCEEEEHHHHEEEEEEEECCCCHHHHHHHHHHHHHH
KGLLPKVVIPVHLAGHCCDMKSLAQLAEEYGFKVIEDASHCIGASYDDSPVGSCQYSDIT
HCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEECCCHHHCCCCCCCCCCCCCCCCCEE
VFSFHPVKIITTAEGGAATTNDAVLAKSMQLLRSHGVTRDELHTEHSDEPWYYEQQVLGF
EEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEHHHHCCC
NYRMTELQAALGVSQFKQLTQLVSRRNILADYYSERLKTLNIDFVAPCEDSYSAWHLMII
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCCCCCEEEEEE
LLPKDIDRKAIFDQLREAGIGVNVHYIPVHTQPYYGQLGFKVGDFPASEAFYQRIITLPL
EECCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEECCCCCHHHHHHHHEECCC
HPQLEFAQLDYICEQLKSFIPR
CCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIQYGKQHICQDDIDAVVNVLQSDFLTQGPQVPLFESRLCQFTQAQHAVAVNSATSALHI
CCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEEECCCHHHHHH
ASLALGVDKGDIVWTSPITFVASSNSALYCGAVVDFVDVELATGNMDMAKLRLKLVDAKR
HHHHEECCCCCEEEECCEEEEECCCCEEEEHHHHEEEEEEEECCCCHHHHHHHHHHHHHH
KGLLPKVVIPVHLAGHCCDMKSLAQLAEEYGFKVIEDASHCIGASYDDSPVGSCQYSDIT
HCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEECCCHHHCCCCCCCCCCCCCCCCCEE
VFSFHPVKIITTAEGGAATTNDAVLAKSMQLLRSHGVTRDELHTEHSDEPWYYEQQVLGF
EEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEHHHHCCC
NYRMTELQAALGVSQFKQLTQLVSRRNILADYYSERLKTLNIDFVAPCEDSYSAWHLMII
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCCCCCEEEEEE
LLPKDIDRKAIFDQLREAGIGVNVHYIPVHTQPYYGQLGFKVGDFPASEAFYQRIITLPL
EECCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEECCCCCHHHHHHHHEECCC
HPQLEFAQLDYICEQLKSFIPR
CCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]