Click here to switch to the map view.

The map label for this gene is 167623324

Identifier: 167623324

GI number: 167623324

Start: 1682056

End: 1683057

Strand: Direct

Name: 167623324

Synonym: Shal_1393

Alternate gene names: NA

Gene position: 1682056-1683057 (Clockwise)

Preceding gene: 167623320

Following gene: 167623325

Centisome position: 32.18

GC content: 40.92

Gene sequence:

>1002_bases
ATGTTTAATAATAAATCAATATTGATAACGGGTGGTACAGGTTCATTTGGAAGAATGTACACTAGAACCATCCTTGAACG
TTATAAACCTAAGCGTCTTATTATATTCTCACGTGATGAGTTAAAACAGTACGAGATGCAGCAGGAGTTTAACGAGCCTT
GCATGAGATACTTTATTGGTGATGTCCGTGATGGCGATAGACTAAAGCAAGCGTTTCGTGATGTAGATTTTGTTATCCAC
GCTGCAGCACTTAAGCAAGTTCCGGCAGCAGAATATAATCCTATGGAGTGCATTAAGACTAACATCCATGGTGCTGAAAA
TGTGATTAAGGCTGCTATAGAAAATGGGGTAGAGAAAGTCATTGCACTATCAACGGATAAGGCCGCTAATCCGATTAATT
TATATGGTGCAACTAAACTTGCTTCTGACAAGCTTTTTGTTGCAGCTAATAACATTGTTGGCGAGGGCCGAACCCGTTTC
TCCGCTGTACGATATGGTAATGTTGTAGGCTCTAGAGGCTCTGTGGTACCGCTATTTAAAGCAATTGTAGCAAGAGGCGA
AACATGTTTGCCCATAACCCATGAAGAGATGACGCGCTTTTGGATCTCTTTGCAAGATGGCGTCGATTTTGTGTTAAAGA
ATTTTTCTCGGATGCAGGGAGGCGAAATTTTTGTCCCTAAGATCCCTTCAGTATGCATTACCGATCTAGCGAAAGCTTAT
GCTCCCAATTTAGAGCATAAAATTATTGGTATTCGCCCTGGAGAAAAAATGCATGAAATCATGTGTCCTGCCGATGATTC
GCATCACACCATAGAGTTTGAAGATCATTTTGTGATTACACCAAGCATCTCATTTTTTGGCAGAAGCAATGAATATTCGG
TCAACATGTTAGGCGAGCAAGGTCAACTTGTTGAGTTAGGTTACGAATATCACTCTGGTAATAATCCCCATTTCCTTAGT
CCGGATGAAATTCTCGCTTTGGATGAGAGCCTAGGTTTATGA

Upstream 100 bases:

>100_bases
GGCTGCATTTTGTGGCATGTATTTTGCCGCATGCAGAACTAAAGATACGCCAGTGATATTTTTTTGACAGCTTATATTTG
AAGGGCGATGGTGACAAATA

Downstream 100 bases:

>100_bases
TCCAATACGGGAAACAACATATTTGCCAAGATGATATCGATGCTGTCGTGAATGTGTTGCAGTCTGACTTTTTGACCCAA
GGACCGCAAGTTCCATTATT

Product: polysaccharide biosynthesis protein CapD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MFNNKSILITGGTGSFGRMYTRTILERYKPKRLIIFSRDELKQYEMQQEFNEPCMRYFIGDVRDGDRLKQAFRDVDFVIH
AAALKQVPAAEYNPMECIKTNIHGAENVIKAAIENGVEKVIALSTDKAANPINLYGATKLASDKLFVAANNIVGEGRTRF
SAVRYGNVVGSRGSVVPLFKAIVARGETCLPITHEEMTRFWISLQDGVDFVLKNFSRMQGGEIFVPKIPSVCITDLAKAY
APNLEHKIIGIRPGEKMHEIMCPADDSHHTIEFEDHFVITPSISFFGRSNEYSVNMLGEQGQLVELGYEYHSGNNPHFLS
PDEILALDESLGL

Sequences:

>Translated_333_residues
MFNNKSILITGGTGSFGRMYTRTILERYKPKRLIIFSRDELKQYEMQQEFNEPCMRYFIGDVRDGDRLKQAFRDVDFVIH
AAALKQVPAAEYNPMECIKTNIHGAENVIKAAIENGVEKVIALSTDKAANPINLYGATKLASDKLFVAANNIVGEGRTRF
SAVRYGNVVGSRGSVVPLFKAIVARGETCLPITHEEMTRFWISLQDGVDFVLKNFSRMQGGEIFVPKIPSVCITDLAKAY
APNLEHKIIGIRPGEKMHEIMCPADDSHHTIEFEDHFVITPSISFFGRSNEYSVNMLGEQGQLVELGYEYHSGNNPHFLS
PDEILALDESLGL
>Mature_333_residues
MFNNKSILITGGTGSFGRMYTRTILERYKPKRLIIFSRDELKQYEMQQEFNEPCMRYFIGDVRDGDRLKQAFRDVDFVIH
AAALKQVPAAEYNPMECIKTNIHGAENVIKAAIENGVEKVIALSTDKAANPINLYGATKLASDKLFVAANNIVGEGRTRF
SAVRYGNVVGSRGSVVPLFKAIVARGETCLPITHEEMTRFWISLQDGVDFVLKNFSRMQGGEIFVPKIPSVCITDLAKAY
APNLEHKIIGIRPGEKMHEIMCPADDSHHTIEFEDHFVITPSISFFGRSNEYSVNMLGEQGQLVELGYEYHSGNNPHFLS
PDEILALDESLGL

Specific function: Unknown

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 37300; Mature: 37300

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNNKSILITGGTGSFGRMYTRTILERYKPKRLIIFSRDELKQYEMQQEFNEPCMRYFIG
CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCHHHHHHHHC
DVRDGDRLKQAFRDVDFVIHAAALKQVPAAEYNPMECIKTNIHGAENVIKAAIENGVEKV
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHE
IALSTDKAANPINLYGATKLASDKLFVAANNIVGEGRTRFSAVRYGNVVGSRGSVVPLFK
EEECCCCCCCCEEEEECCEECCCEEEEEECCCCCCCCHHHHHEEECCCCCCCCCHHHHHH
AIVARGETCLPITHEEMTRFWISLQDGVDFVLKNFSRMQGGEIFVPKIPSVCITDLAKAY
HHHHCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
APNLEHKIIGIRPGEKMHEIMCPADDSHHTIEFEDHFVITPSISFFGRSNEYSVNMLGEQ
CCCCCCEEEEECCCHHHHHEECCCCCCCCEEEECCCEEECCCHHCCCCCCCEEEEEECCC
GQLVELGYEYHSGNNPHFLSPDEILALDESLGL
CCEEEEEEEECCCCCCCCCCCHHHEECHHHCCC
>Mature Secondary Structure
MFNNKSILITGGTGSFGRMYTRTILERYKPKRLIIFSRDELKQYEMQQEFNEPCMRYFIG
CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCHHHHHHHHC
DVRDGDRLKQAFRDVDFVIHAAALKQVPAAEYNPMECIKTNIHGAENVIKAAIENGVEKV
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHE
IALSTDKAANPINLYGATKLASDKLFVAANNIVGEGRTRFSAVRYGNVVGSRGSVVPLFK
EEECCCCCCCCEEEEECCEECCCEEEEEECCCCCCCCHHHHHEEECCCCCCCCCHHHHHH
AIVARGETCLPITHEEMTRFWISLQDGVDFVLKNFSRMQGGEIFVPKIPSVCITDLAKAY
HHHHCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
APNLEHKIIGIRPGEKMHEIMCPADDSHHTIEFEDHFVITPSISFFGRSNEYSVNMLGEQ
CCCCCCEEEEECCCHHHHHEECCCCCCCCEEEECCCEEECCCHHCCCCCCCEEEEEECCC
GQLVELGYEYHSGNNPHFLSPDEILALDESLGL
CCEEEEEEEECCCCCCCCCCCHHHEECHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]