Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167623099

Identifier: 167623099

GI number: 167623099

Start: 1418431

End: 1420299

Strand: Reverse

Name: 167623099

Synonym: Shal_1165

Alternate gene names: NA

Gene position: 1420299-1418431 (Counterclockwise)

Preceding gene: 167623100

Following gene: 167623098

Centisome position: 27.17

GC content: 48.31

Gene sequence:

>1869_bases
ATGCCCATAAAAACAAAAATTAGCCTTATCGCCCTTTCACTATCCATTGGACTAAGTGCCAACCCTACTATTGCCGCACC
AACTTCCGCCTCCTTTTTAAGCCCAAGTGAGCCCGTAGCCCATAAGGCAGAGAGTGAGTCAGAAAAAGCTAACGCCTTGT
TTGAAAGCATTTTTATGGAAAACGTGATGGCCAGCCCCATCTCTCAAACCCATCTCGGTATTAAAACCGATTATGATAAA
TGGGACGAGATGGGGGACACTGCAGACGATGCCGCCCTTGCACGCACGAAGAAACACCTCGCGCAGCTCAAACAGATCGA
TGTCAGCAAACTAACAGGCCAAACCTTACTCAGCTATCAGCTGCTGACACAAAAACTTGAGCAAGTCATTATCGATGACA
AATGGCGCTACCATAGTTACCCCGTCAACCAGATGTATGGCGGCCACTCACAAATCGCCTCTTTCTTAATTAACCAACAT
CAGATTGGCAATATAGAAGATGCCAAGGCTTATATTAGCCGTCTACAAGGGGTGCCTAAGCGTTTATCTCAGCTACAGGG
CGCATTAGAAGTGCGCGAGAGCAAAGGGATTATCGCACCGAAGTTTGTCTTCCCATATGTGATCACCGACAGCCAAAATA
TCGTTGCAGGTGCGCCCTTCACTGCTAAGTCTGATAGTGGTGAAAAGGCACAAGACAGTGCGTTATGGGCCGACTTTAAA
CGAAAAGTCTCAAGCTTAGAGATCAGCGATAGCGATAAAGAAAGCCTATTGCGTGACGCTAAAACCGCATTAGTTAACGA
TGTAAAGCCTGCCTACGACAAGCTAATCGCCTACATGACCAAGCTTGAAACCAAGGCTGATATCCGTGATGGTGCGTGGA
AGTTCCCCCAAGGCGACACGTACTACAACAACGCACTGGCGCGCACCACCACAACCGATATGACCGCCAGTGATATCCAT
CAGCTTGGCCTTTCAGAAGTCGCACGTATTCATAGCGAAATGCGTGACATCATGCACAAGGTCAACTTTGAGGGCTCGCT
GCCAGAGTTCTTTAAGTTTATGCGTGAGGACGAGCAGTTCTACTACGCCAACGATGATAAAGGTCGCAAGGCATATCTTG
ATGAGGCCACCGCACTTATCGATACCATGAGCAGCAGGCTCGACGAGGTGTTTAAGATAAAACCTAAAGCACCAATGATC
GTTAAGCAGGTCGAAGCCTTTAGAGAGAAATCTGCCGGTAAGGCGTTTTACAATAACCCCTCTCCTGATGGAAGCCGCCC
AGGTACCTACTACGCCAACCTTTATGACATGAAGGCGATGCCTAAATATCAGATGGAGGCACTGGCCTATCACGAAGGTA
CGCCGGGTCACCATATGCAGATTGCTATCGCTCAAGAACTTGAGAGCGTACCCAAGTTTCGTAAATTTGGTGGCTATACC
GCCTATATCGAGGGCTGGGGTCTGTACAGCGAATACTTTCCGAAAGAGATGGGCATGTATTCAGATCCCTACTCAGACTT
TGGCCGCCTAGCCATGGAGCTTTGGCGCGCATGTCGATTAGTGGTCGATACTGGAATTCATGCTAAGAAGTGGACCCGTG
AAGAATCTATCGAATACTACGTATCGAATACCCCCAATGCTAAATCGGATGCCGTGAAGATGGTGGAACGCCATATCGTG
ATGCCATCACAGGCCACCGCCTATAAGGTCGGGATGATCAAGCTACTGGCCCTGAGAGATAAGGCGCAACAAGCCTTGGG
CGATAAATTCGATATTCGTGACTTCCACACAATCGTCCTCAAGAACGGTCCTGTACCGTTGGATGTACTGGAAAGCGAAA
TCAACCTTTGGATTGAGCAAAGTAGCTAA

Upstream 100 bases:

>100_bases
TAACAATTTGCTTCTATAGAAATATTTTCTAACACTTAAAACAAAAAATTGACCGACGGCTTCTTTAGGATAACTAACAT
AATTCTAAGGAAGCCTAAAA

Downstream 100 bases:

>100_bases
TCATCTAATGATGATTCTAGGTTAAGCTTAGAATCTGAACTAGAAACTCTGACTCAGGCTCTGAGTCAGAAAGTATCACC
GGCCACAACACTGTTGTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 622; Mature: 621

Protein sequence:

>622_residues
MPIKTKISLIALSLSIGLSANPTIAAPTSASFLSPSEPVAHKAESESEKANALFESIFMENVMASPISQTHLGIKTDYDK
WDEMGDTADDAALARTKKHLAQLKQIDVSKLTGQTLLSYQLLTQKLEQVIIDDKWRYHSYPVNQMYGGHSQIASFLINQH
QIGNIEDAKAYISRLQGVPKRLSQLQGALEVRESKGIIAPKFVFPYVITDSQNIVAGAPFTAKSDSGEKAQDSALWADFK
RKVSSLEISDSDKESLLRDAKTALVNDVKPAYDKLIAYMTKLETKADIRDGAWKFPQGDTYYNNALARTTTTDMTASDIH
QLGLSEVARIHSEMRDIMHKVNFEGSLPEFFKFMREDEQFYYANDDKGRKAYLDEATALIDTMSSRLDEVFKIKPKAPMI
VKQVEAFREKSAGKAFYNNPSPDGSRPGTYYANLYDMKAMPKYQMEALAYHEGTPGHHMQIAIAQELESVPKFRKFGGYT
AYIEGWGLYSEYFPKEMGMYSDPYSDFGRLAMELWRACRLVVDTGIHAKKWTREESIEYYVSNTPNAKSDAVKMVERHIV
MPSQATAYKVGMIKLLALRDKAQQALGDKFDIRDFHTIVLKNGPVPLDVLESEINLWIEQSS

Sequences:

>Translated_622_residues
MPIKTKISLIALSLSIGLSANPTIAAPTSASFLSPSEPVAHKAESESEKANALFESIFMENVMASPISQTHLGIKTDYDK
WDEMGDTADDAALARTKKHLAQLKQIDVSKLTGQTLLSYQLLTQKLEQVIIDDKWRYHSYPVNQMYGGHSQIASFLINQH
QIGNIEDAKAYISRLQGVPKRLSQLQGALEVRESKGIIAPKFVFPYVITDSQNIVAGAPFTAKSDSGEKAQDSALWADFK
RKVSSLEISDSDKESLLRDAKTALVNDVKPAYDKLIAYMTKLETKADIRDGAWKFPQGDTYYNNALARTTTTDMTASDIH
QLGLSEVARIHSEMRDIMHKVNFEGSLPEFFKFMREDEQFYYANDDKGRKAYLDEATALIDTMSSRLDEVFKIKPKAPMI
VKQVEAFREKSAGKAFYNNPSPDGSRPGTYYANLYDMKAMPKYQMEALAYHEGTPGHHMQIAIAQELESVPKFRKFGGYT
AYIEGWGLYSEYFPKEMGMYSDPYSDFGRLAMELWRACRLVVDTGIHAKKWTREESIEYYVSNTPNAKSDAVKMVERHIV
MPSQATAYKVGMIKLLALRDKAQQALGDKFDIRDFHTIVLKNGPVPLDVLESEINLWIEQSS
>Mature_621_residues
PIKTKISLIALSLSIGLSANPTIAAPTSASFLSPSEPVAHKAESESEKANALFESIFMENVMASPISQTHLGIKTDYDKW
DEMGDTADDAALARTKKHLAQLKQIDVSKLTGQTLLSYQLLTQKLEQVIIDDKWRYHSYPVNQMYGGHSQIASFLINQHQ
IGNIEDAKAYISRLQGVPKRLSQLQGALEVRESKGIIAPKFVFPYVITDSQNIVAGAPFTAKSDSGEKAQDSALWADFKR
KVSSLEISDSDKESLLRDAKTALVNDVKPAYDKLIAYMTKLETKADIRDGAWKFPQGDTYYNNALARTTTTDMTASDIHQ
LGLSEVARIHSEMRDIMHKVNFEGSLPEFFKFMREDEQFYYANDDKGRKAYLDEATALIDTMSSRLDEVFKIKPKAPMIV
KQVEAFREKSAGKAFYNNPSPDGSRPGTYYANLYDMKAMPKYQMEALAYHEGTPGHHMQIAIAQELESVPKFRKFGGYTA
YIEGWGLYSEYFPKEMGMYSDPYSDFGRLAMELWRACRLVVDTGIHAKKWTREESIEYYVSNTPNAKSDAVKMVERHIVM
PSQATAYKVGMIKLLALRDKAQQALGDKFDIRDFHTIVLKNGPVPLDVLESEINLWIEQSS

Specific function: Unknown

COG id: COG4805

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70011; Mature: 69880

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIKTKISLIALSLSIGLSANPTIAAPTSASFLSPSEPVAHKAESESEKANALFESIFME
CCCCCEEEEEEEEEEECCCCCCCEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHH
NVMASPISQTHLGIKTDYDKWDEMGDTADDAALARTKKHLAQLKQIDVSKLTGQTLLSYQ
HHHHCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLTQKLEQVIIDDKWRYHSYPVNQMYGGHSQIASFLINQHQIGNIEDAKAYISRLQGVPK
HHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHH
RLSQLQGALEVRESKGIIAPKFVFPYVITDSQNIVAGAPFTAKSDSGEKAQDSALWADFK
HHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHH
RKVSSLEISDSDKESLLRDAKTALVNDVKPAYDKLIAYMTKLETKADIRDGAWKFPQGDT
HHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
YYNNALARTTTTDMTASDIHQLGLSEVARIHSEMRDIMHKVNFEGSLPEFFKFMREDEQF
HHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCE
YYANDDKGRKAYLDEATALIDTMSSRLDEVFKIKPKAPMIVKQVEAFREKSAGKAFYNNP
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
SPDGSRPGTYYANLYDMKAMPKYQMEALAYHEGTPGHHMQIAIAQELESVPKFRKFGGYT
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHCCEE
AYIEGWGLYSEYFPKEMGMYSDPYSDFGRLAMELWRACRLVVDTGIHAKKWTREESIEYY
EEEECCCCHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEE
VSNTPNAKSDAVKMVERHIVMPSQATAYKVGMIKLLALRDKAQQALGDKFDIRDFHTIVL
ECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
KNGPVPLDVLESEINLWIEQSS
ECCCCCHHHHHCCCEEEEECCC
>Mature Secondary Structure 
PIKTKISLIALSLSIGLSANPTIAAPTSASFLSPSEPVAHKAESESEKANALFESIFME
CCCCEEEEEEEEEEECCCCCCCEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHH
NVMASPISQTHLGIKTDYDKWDEMGDTADDAALARTKKHLAQLKQIDVSKLTGQTLLSYQ
HHHHCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLTQKLEQVIIDDKWRYHSYPVNQMYGGHSQIASFLINQHQIGNIEDAKAYISRLQGVPK
HHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHH
RLSQLQGALEVRESKGIIAPKFVFPYVITDSQNIVAGAPFTAKSDSGEKAQDSALWADFK
HHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHH
RKVSSLEISDSDKESLLRDAKTALVNDVKPAYDKLIAYMTKLETKADIRDGAWKFPQGDT
HHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
YYNNALARTTTTDMTASDIHQLGLSEVARIHSEMRDIMHKVNFEGSLPEFFKFMREDEQF
HHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCE
YYANDDKGRKAYLDEATALIDTMSSRLDEVFKIKPKAPMIVKQVEAFREKSAGKAFYNNP
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
SPDGSRPGTYYANLYDMKAMPKYQMEALAYHEGTPGHHMQIAIAQELESVPKFRKFGGYT
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHCCEE
AYIEGWGLYSEYFPKEMGMYSDPYSDFGRLAMELWRACRLVVDTGIHAKKWTREESIEYY
EEEECCCCHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEE
VSNTPNAKSDAVKMVERHIVMPSQATAYKVGMIKLLALRDKAQQALGDKFDIRDFHTIVL
ECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
KNGPVPLDVLESEINLWIEQSS
ECCCCCHHHHHCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA