| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623099
Identifier: 167623099
GI number: 167623099
Start: 1418431
End: 1420299
Strand: Reverse
Name: 167623099
Synonym: Shal_1165
Alternate gene names: NA
Gene position: 1420299-1418431 (Counterclockwise)
Preceding gene: 167623100
Following gene: 167623098
Centisome position: 27.17
GC content: 48.31
Gene sequence:
>1869_bases ATGCCCATAAAAACAAAAATTAGCCTTATCGCCCTTTCACTATCCATTGGACTAAGTGCCAACCCTACTATTGCCGCACC AACTTCCGCCTCCTTTTTAAGCCCAAGTGAGCCCGTAGCCCATAAGGCAGAGAGTGAGTCAGAAAAAGCTAACGCCTTGT TTGAAAGCATTTTTATGGAAAACGTGATGGCCAGCCCCATCTCTCAAACCCATCTCGGTATTAAAACCGATTATGATAAA TGGGACGAGATGGGGGACACTGCAGACGATGCCGCCCTTGCACGCACGAAGAAACACCTCGCGCAGCTCAAACAGATCGA TGTCAGCAAACTAACAGGCCAAACCTTACTCAGCTATCAGCTGCTGACACAAAAACTTGAGCAAGTCATTATCGATGACA AATGGCGCTACCATAGTTACCCCGTCAACCAGATGTATGGCGGCCACTCACAAATCGCCTCTTTCTTAATTAACCAACAT CAGATTGGCAATATAGAAGATGCCAAGGCTTATATTAGCCGTCTACAAGGGGTGCCTAAGCGTTTATCTCAGCTACAGGG CGCATTAGAAGTGCGCGAGAGCAAAGGGATTATCGCACCGAAGTTTGTCTTCCCATATGTGATCACCGACAGCCAAAATA TCGTTGCAGGTGCGCCCTTCACTGCTAAGTCTGATAGTGGTGAAAAGGCACAAGACAGTGCGTTATGGGCCGACTTTAAA CGAAAAGTCTCAAGCTTAGAGATCAGCGATAGCGATAAAGAAAGCCTATTGCGTGACGCTAAAACCGCATTAGTTAACGA TGTAAAGCCTGCCTACGACAAGCTAATCGCCTACATGACCAAGCTTGAAACCAAGGCTGATATCCGTGATGGTGCGTGGA AGTTCCCCCAAGGCGACACGTACTACAACAACGCACTGGCGCGCACCACCACAACCGATATGACCGCCAGTGATATCCAT CAGCTTGGCCTTTCAGAAGTCGCACGTATTCATAGCGAAATGCGTGACATCATGCACAAGGTCAACTTTGAGGGCTCGCT GCCAGAGTTCTTTAAGTTTATGCGTGAGGACGAGCAGTTCTACTACGCCAACGATGATAAAGGTCGCAAGGCATATCTTG ATGAGGCCACCGCACTTATCGATACCATGAGCAGCAGGCTCGACGAGGTGTTTAAGATAAAACCTAAAGCACCAATGATC GTTAAGCAGGTCGAAGCCTTTAGAGAGAAATCTGCCGGTAAGGCGTTTTACAATAACCCCTCTCCTGATGGAAGCCGCCC AGGTACCTACTACGCCAACCTTTATGACATGAAGGCGATGCCTAAATATCAGATGGAGGCACTGGCCTATCACGAAGGTA CGCCGGGTCACCATATGCAGATTGCTATCGCTCAAGAACTTGAGAGCGTACCCAAGTTTCGTAAATTTGGTGGCTATACC GCCTATATCGAGGGCTGGGGTCTGTACAGCGAATACTTTCCGAAAGAGATGGGCATGTATTCAGATCCCTACTCAGACTT TGGCCGCCTAGCCATGGAGCTTTGGCGCGCATGTCGATTAGTGGTCGATACTGGAATTCATGCTAAGAAGTGGACCCGTG AAGAATCTATCGAATACTACGTATCGAATACCCCCAATGCTAAATCGGATGCCGTGAAGATGGTGGAACGCCATATCGTG ATGCCATCACAGGCCACCGCCTATAAGGTCGGGATGATCAAGCTACTGGCCCTGAGAGATAAGGCGCAACAAGCCTTGGG CGATAAATTCGATATTCGTGACTTCCACACAATCGTCCTCAAGAACGGTCCTGTACCGTTGGATGTACTGGAAAGCGAAA TCAACCTTTGGATTGAGCAAAGTAGCTAA
Upstream 100 bases:
>100_bases TAACAATTTGCTTCTATAGAAATATTTTCTAACACTTAAAACAAAAAATTGACCGACGGCTTCTTTAGGATAACTAACAT AATTCTAAGGAAGCCTAAAA
Downstream 100 bases:
>100_bases TCATCTAATGATGATTCTAGGTTAAGCTTAGAATCTGAACTAGAAACTCTGACTCAGGCTCTGAGTCAGAAAGTATCACC GGCCACAACACTGTTGTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 622; Mature: 621
Protein sequence:
>622_residues MPIKTKISLIALSLSIGLSANPTIAAPTSASFLSPSEPVAHKAESESEKANALFESIFMENVMASPISQTHLGIKTDYDK WDEMGDTADDAALARTKKHLAQLKQIDVSKLTGQTLLSYQLLTQKLEQVIIDDKWRYHSYPVNQMYGGHSQIASFLINQH QIGNIEDAKAYISRLQGVPKRLSQLQGALEVRESKGIIAPKFVFPYVITDSQNIVAGAPFTAKSDSGEKAQDSALWADFK RKVSSLEISDSDKESLLRDAKTALVNDVKPAYDKLIAYMTKLETKADIRDGAWKFPQGDTYYNNALARTTTTDMTASDIH QLGLSEVARIHSEMRDIMHKVNFEGSLPEFFKFMREDEQFYYANDDKGRKAYLDEATALIDTMSSRLDEVFKIKPKAPMI VKQVEAFREKSAGKAFYNNPSPDGSRPGTYYANLYDMKAMPKYQMEALAYHEGTPGHHMQIAIAQELESVPKFRKFGGYT AYIEGWGLYSEYFPKEMGMYSDPYSDFGRLAMELWRACRLVVDTGIHAKKWTREESIEYYVSNTPNAKSDAVKMVERHIV MPSQATAYKVGMIKLLALRDKAQQALGDKFDIRDFHTIVLKNGPVPLDVLESEINLWIEQSS
Sequences:
>Translated_622_residues MPIKTKISLIALSLSIGLSANPTIAAPTSASFLSPSEPVAHKAESESEKANALFESIFMENVMASPISQTHLGIKTDYDK WDEMGDTADDAALARTKKHLAQLKQIDVSKLTGQTLLSYQLLTQKLEQVIIDDKWRYHSYPVNQMYGGHSQIASFLINQH QIGNIEDAKAYISRLQGVPKRLSQLQGALEVRESKGIIAPKFVFPYVITDSQNIVAGAPFTAKSDSGEKAQDSALWADFK RKVSSLEISDSDKESLLRDAKTALVNDVKPAYDKLIAYMTKLETKADIRDGAWKFPQGDTYYNNALARTTTTDMTASDIH QLGLSEVARIHSEMRDIMHKVNFEGSLPEFFKFMREDEQFYYANDDKGRKAYLDEATALIDTMSSRLDEVFKIKPKAPMI VKQVEAFREKSAGKAFYNNPSPDGSRPGTYYANLYDMKAMPKYQMEALAYHEGTPGHHMQIAIAQELESVPKFRKFGGYT AYIEGWGLYSEYFPKEMGMYSDPYSDFGRLAMELWRACRLVVDTGIHAKKWTREESIEYYVSNTPNAKSDAVKMVERHIV MPSQATAYKVGMIKLLALRDKAQQALGDKFDIRDFHTIVLKNGPVPLDVLESEINLWIEQSS >Mature_621_residues PIKTKISLIALSLSIGLSANPTIAAPTSASFLSPSEPVAHKAESESEKANALFESIFMENVMASPISQTHLGIKTDYDKW DEMGDTADDAALARTKKHLAQLKQIDVSKLTGQTLLSYQLLTQKLEQVIIDDKWRYHSYPVNQMYGGHSQIASFLINQHQ IGNIEDAKAYISRLQGVPKRLSQLQGALEVRESKGIIAPKFVFPYVITDSQNIVAGAPFTAKSDSGEKAQDSALWADFKR KVSSLEISDSDKESLLRDAKTALVNDVKPAYDKLIAYMTKLETKADIRDGAWKFPQGDTYYNNALARTTTTDMTASDIHQ LGLSEVARIHSEMRDIMHKVNFEGSLPEFFKFMREDEQFYYANDDKGRKAYLDEATALIDTMSSRLDEVFKIKPKAPMIV KQVEAFREKSAGKAFYNNPSPDGSRPGTYYANLYDMKAMPKYQMEALAYHEGTPGHHMQIAIAQELESVPKFRKFGGYTA YIEGWGLYSEYFPKEMGMYSDPYSDFGRLAMELWRACRLVVDTGIHAKKWTREESIEYYVSNTPNAKSDAVKMVERHIVM PSQATAYKVGMIKLLALRDKAQQALGDKFDIRDFHTIVLKNGPVPLDVLESEINLWIEQSS
Specific function: Unknown
COG id: COG4805
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70011; Mature: 69880
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIKTKISLIALSLSIGLSANPTIAAPTSASFLSPSEPVAHKAESESEKANALFESIFME CCCCCEEEEEEEEEEECCCCCCCEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHH NVMASPISQTHLGIKTDYDKWDEMGDTADDAALARTKKHLAQLKQIDVSKLTGQTLLSYQ HHHHCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLTQKLEQVIIDDKWRYHSYPVNQMYGGHSQIASFLINQHQIGNIEDAKAYISRLQGVPK HHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHH RLSQLQGALEVRESKGIIAPKFVFPYVITDSQNIVAGAPFTAKSDSGEKAQDSALWADFK HHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHH RKVSSLEISDSDKESLLRDAKTALVNDVKPAYDKLIAYMTKLETKADIRDGAWKFPQGDT HHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC YYNNALARTTTTDMTASDIHQLGLSEVARIHSEMRDIMHKVNFEGSLPEFFKFMREDEQF HHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCE YYANDDKGRKAYLDEATALIDTMSSRLDEVFKIKPKAPMIVKQVEAFREKSAGKAFYNNP EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC SPDGSRPGTYYANLYDMKAMPKYQMEALAYHEGTPGHHMQIAIAQELESVPKFRKFGGYT CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHCCEE AYIEGWGLYSEYFPKEMGMYSDPYSDFGRLAMELWRACRLVVDTGIHAKKWTREESIEYY EEEECCCCHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEE VSNTPNAKSDAVKMVERHIVMPSQATAYKVGMIKLLALRDKAQQALGDKFDIRDFHTIVL ECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE KNGPVPLDVLESEINLWIEQSS ECCCCCHHHHHCCCEEEEECCC >Mature Secondary Structure PIKTKISLIALSLSIGLSANPTIAAPTSASFLSPSEPVAHKAESESEKANALFESIFME CCCCEEEEEEEEEEECCCCCCCEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHH NVMASPISQTHLGIKTDYDKWDEMGDTADDAALARTKKHLAQLKQIDVSKLTGQTLLSYQ HHHHCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLTQKLEQVIIDDKWRYHSYPVNQMYGGHSQIASFLINQHQIGNIEDAKAYISRLQGVPK HHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHH RLSQLQGALEVRESKGIIAPKFVFPYVITDSQNIVAGAPFTAKSDSGEKAQDSALWADFK HHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHH RKVSSLEISDSDKESLLRDAKTALVNDVKPAYDKLIAYMTKLETKADIRDGAWKFPQGDT HHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC YYNNALARTTTTDMTASDIHQLGLSEVARIHSEMRDIMHKVNFEGSLPEFFKFMREDEQF HHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCE YYANDDKGRKAYLDEATALIDTMSSRLDEVFKIKPKAPMIVKQVEAFREKSAGKAFYNNP EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC SPDGSRPGTYYANLYDMKAMPKYQMEALAYHEGTPGHHMQIAIAQELESVPKFRKFGGYT CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHCCEE AYIEGWGLYSEYFPKEMGMYSDPYSDFGRLAMELWRACRLVVDTGIHAKKWTREESIEYY EEEECCCCHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEE VSNTPNAKSDAVKMVERHIVMPSQATAYKVGMIKLLALRDKAQQALGDKFDIRDFHTIVL ECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE KNGPVPLDVLESEINLWIEQSS ECCCCCHHHHHCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA