Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 167623098

GI number: 167623098

Start: 1416563

End: 1418149

Strand: Reverse

Name: cydA [H]

Synonym: Shal_1164

Alternate gene names: 167623098

Gene position: 1418149-1416563 (Counterclockwise)

Preceding gene: 167623099

Following gene: 167623095

Centisome position: 27.13

GC content: 47.07

Gene sequence:

>1587_bases
ATGATTGAACACGCGTTAACCGATACCGCTAGACTCGAGTTTGGCCTCAGTATGATGGTGCACCAGATTTTTGTGCCATT
GTTTATAGGCCTGATGCTAGTCACTGCGATTTTTGAAACCTTATACGTCACTAAATCAAATGCTGAATATAAGTCGGCAG
CCCAATTTATTGGCAAACTGTGTTTGCCAATTGTCTTTGTATTAATTATCACAGGCATACTCACACCGCCGATGCCGGAG
GACTGGCAACAACTCGATCTCTTTATCAACAGCGTATTTAGTGAATATGTTGGACTACTTGGCACCATAGTGTCCACTGG
CATGCTGATTTGGCTCACGGCTGTGGTCCTGTTCTATATCGGTTGGCGACACCTGCCCGCTAAGCTCCACCTTTTCATCA
CTTGGTTATTACCCTTTATCTGTGCCTATACCGAGCTGCCTGTCATCGTACTCAATGGCTGGATGCATGACCCAAGCTCT
GCGATGCAATTTGATATCAACACCATGACATATCAAGCTGCATCGCTGTATGAGATTGTTACTACACCGATGGCAAGTAC
GCGTTTTGCACATATGTTTACCGGGGCATTCTTAATCGGCGGCGTGACACTGATCTCGCTATCTTGCTACTACCTACAGA
AAAATAGCCAGCAAGCTTTTGGCCAAGCTGGGGTTGTGATTGGCGCCAGTATCGGCTTATGTTTCTCACTATTTGCCCTA
TTTAGCGGAGACATTCACGGCCGTGACGTTCATCAGGCACAACCGATGAAACTCGCGCAGCTTGAAGCGCTATGGGAGAC
AGAGCAAGATGGCGCAGATCTGGTGTTATTAGCACTACCGGATCAGCAAGCAGAAAAGAATCACTTCGAAATTAAAATTC
CTCAACTCTTAGGCTGGATGCTATCGGGAACTGATAGCAGTGAGCAAGTGAAAGGGATCAAGCAGTTAAGAGCCGAAAAT
ATGCAGCGTATTCGCAATGGACTATTAGCCCGTCAAGCAATCACTCGTTACTCAGACGACTCAAGTACAGACAAACAAGC
CGATAGAGATCTAATCCAAGCCTATCAGCACAATCTTGGCTACGCAGAGCTAGTGCGCAAATATAATCCGCAGCTAATTG
ATGTCACCGAAGAGCAGATCCGCAGCGCAGCCAATGATACGGTTAACAATGTGAGCGTGTTATTTTTTAGCTTCCGAGTG
ATGGTGGGGGCAGGGCTGTTTATCTTACTGCTGAGCAGTTACTGGGTTTACCTCGCAGCCAAAGGCAAACTACAAAGTGC
AAGTGATAGGTTGCTTAAACTCAGTACCTACGCCCTGCCCATACCCTTTATCGCGTACCTCTCTGGCTGGTTACTCTCTG
AGTATGGCCGCCAACCTTGGGTAGTTTATGGCGTCATGCCAACACTACAAGGAGCGGGAACGTTTTCTGCTGGCGAAACC
CATGGTTTCCATGTCCCGACCCTATTGATGAGCTATGGCGTATTGGCTGTTATCTTTGGTTGGTTACTAACTCGCTGGAT
CAAAAAAGGCCCTAATCCAGTTACAGCATCTACATCTACAAGTGCCAAACCTTCGGAGGGGTTATGA

Upstream 100 bases:

>100_bases
AGTCACTGCACCAGCCTATCTTCGCAGGAAAAACAGATTCAACTTGTAGGAAAACCAATCCTGATATGCTCCGGCCAACT
ATATGGATAGGTATGTAATC

Downstream 100 bases:

>100_bases
TCTATTTCTCAGTGATTTTTGTCGCGATAGCAGCGGCTATCCTAGCTAACAGACTCATTAAGCACTAGCTACTTTTAGTG
ACTTTATGAGTGCAACGAGC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MIEHALTDTARLEFGLSMMVHQIFVPLFIGLMLVTAIFETLYVTKSNAEYKSAAQFIGKLCLPIVFVLIITGILTPPMPE
DWQQLDLFINSVFSEYVGLLGTIVSTGMLIWLTAVVLFYIGWRHLPAKLHLFITWLLPFICAYTELPVIVLNGWMHDPSS
AMQFDINTMTYQAASLYEIVTTPMASTRFAHMFTGAFLIGGVTLISLSCYYLQKNSQQAFGQAGVVIGASIGLCFSLFAL
FSGDIHGRDVHQAQPMKLAQLEALWETEQDGADLVLLALPDQQAEKNHFEIKIPQLLGWMLSGTDSSEQVKGIKQLRAEN
MQRIRNGLLARQAITRYSDDSSTDKQADRDLIQAYQHNLGYAELVRKYNPQLIDVTEEQIRSAANDTVNNVSVLFFSFRV
MVGAGLFILLLSSYWVYLAAKGKLQSASDRLLKLSTYALPIPFIAYLSGWLLSEYGRQPWVVYGVMPTLQGAGTFSAGET
HGFHVPTLLMSYGVLAVIFGWLLTRWIKKGPNPVTASTSTSAKPSEGL

Sequences:

>Translated_528_residues
MIEHALTDTARLEFGLSMMVHQIFVPLFIGLMLVTAIFETLYVTKSNAEYKSAAQFIGKLCLPIVFVLIITGILTPPMPE
DWQQLDLFINSVFSEYVGLLGTIVSTGMLIWLTAVVLFYIGWRHLPAKLHLFITWLLPFICAYTELPVIVLNGWMHDPSS
AMQFDINTMTYQAASLYEIVTTPMASTRFAHMFTGAFLIGGVTLISLSCYYLQKNSQQAFGQAGVVIGASIGLCFSLFAL
FSGDIHGRDVHQAQPMKLAQLEALWETEQDGADLVLLALPDQQAEKNHFEIKIPQLLGWMLSGTDSSEQVKGIKQLRAEN
MQRIRNGLLARQAITRYSDDSSTDKQADRDLIQAYQHNLGYAELVRKYNPQLIDVTEEQIRSAANDTVNNVSVLFFSFRV
MVGAGLFILLLSSYWVYLAAKGKLQSASDRLLKLSTYALPIPFIAYLSGWLLSEYGRQPWVVYGVMPTLQGAGTFSAGET
HGFHVPTLLMSYGVLAVIFGWLLTRWIKKGPNPVTASTSTSAKPSEGL
>Mature_528_residues
MIEHALTDTARLEFGLSMMVHQIFVPLFIGLMLVTAIFETLYVTKSNAEYKSAAQFIGKLCLPIVFVLIITGILTPPMPE
DWQQLDLFINSVFSEYVGLLGTIVSTGMLIWLTAVVLFYIGWRHLPAKLHLFITWLLPFICAYTELPVIVLNGWMHDPSS
AMQFDINTMTYQAASLYEIVTTPMASTRFAHMFTGAFLIGGVTLISLSCYYLQKNSQQAFGQAGVVIGASIGLCFSLFAL
FSGDIHGRDVHQAQPMKLAQLEALWETEQDGADLVLLALPDQQAEKNHFEIKIPQLLGWMLSGTDSSEQVKGIKQLRAEN
MQRIRNGLLARQAITRYSDDSSTDKQADRDLIQAYQHNLGYAELVRKYNPQLIDVTEEQIRSAANDTVNNVSVLFFSFRV
MVGAGLFILLLSSYWVYLAAKGKLQSASDRLLKLSTYALPIPFIAYLSGWLLSEYGRQPWVVYGVMPTLQGAGTFSAGET
HGFHVPTLLMSYGVLAVIFGWLLTRWIKKGPNPVTASTSTSAKPSEGL

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=529, Percent_Identity=31.0018903591682, Blast_Score=272, Evalue=4e-74,
Organism=Escherichia coli, GI1787212, Length=524, Percent_Identity=30.7251908396947, Blast_Score=244, Evalue=7e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58700; Mature: 58700

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]