| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623095
Identifier: 167623095
GI number: 167623095
Start: 1413613
End: 1414731
Strand: Reverse
Name: 167623095
Synonym: Shal_1161
Alternate gene names: NA
Gene position: 1414731-1413613 (Counterclockwise)
Preceding gene: 167623098
Following gene: 167623088
Centisome position: 27.07
GC content: 49.69
Gene sequence:
>1119_bases ATGTCTGAAAATACACCAATTGAGCTAAGTACAGAGATAGGTCCAAACTGGTTTGCCTCGGTTATGGGCACTGGCATCAT CGCTAATGCCGCTATTGGACTGCCGATGTTCGGTGGCCATTTAAGTGGCATAGGGCTGATTATCTGGTTACTCGCATCCT TGATGTTAATCACTATGATATTGCTAAAAACGATTCAGACCATTATCAAGCCCCACATTATAAAGCGGCAATTTAACGAT CCTGTTATGTCGCAATTTTTTGGTGCGCCTCCAATGGCGATGCTTACCATAGCAGGAGGAACCCTATTGTACGGCCAGCA AGTGATGGCCATTGATACCGCCATTACAATCGCTTGGGGTCTGTGGATAGTGGGGACTCTGCTTGGGCTCGTTACCGCCG TTATTATTCCGTTTCGTCTTTTTACTCATCATCAAGTCCGCGACGATGCCGCCTTTGGTGGCTGGCTTATGCCCGTCGTT CCGCCTATGGTCTCAGCCGCTATTGGCGCCATGTTAATCCCCCATGTAGAAAGTATCACCCTACAACAGACGCTGCTTTA TGCCTGCTATGCCATGTTTGGCATTAGCTTGTTTAGTGCCTTGATTATTATCACAATGATCTGGAGTCGCTTAGCCCACT CCGGCACATCTGGCGGCGCACGTGTCCCGACTCTTTGGATTGTGTTGGGGCCACTAGGCCAATCAATTACCGCAGCAGGC GCCCTAGGTAGCGTGGCGCTACTCGTTGTCGACGAACCTATATCGACGGGAATGAATACCATGGCGATTCTTTACGGTGT TCCAGCCTGGGGCTTTGCTTTTTTCTGGTCGATACTCGCAAGCTTACTGACATTGCGGGCTCTGAGAAGAAAAATGCCCT TCGCTCTCACTTGGTGGGCGTTTACCTTCCCGGTGGGTACTTGCGTAACCGGAACGACGCAACTGGCGTTACATACTGGC CTGCCCGCGTTTGAGTGGGCGGCAGTTCTGTTATTTACCGGCTTAATTTTCGCTTGGATTATCGCAGCGATTGGCACTAT AAAGGGCTTGAAAGGTGGCAAAATCATGAAGAACCCAACCACATCGTCCCATGTCGTTTCTAAAAAAGGCCAGCTCTAA
Upstream 100 bases:
>100_bases GGGCTTAATGCATACTAAAGTCGATTCAACATTGTACTTATTACCTCAAACGAATTAGCTTTAATAAGATAACGTTAAAC ATTTAGCGGTAAGGAAATAT
Downstream 100 bases:
>100_bases CACCTCTATTGAAACGCTATATGTCCACAAGAACCTCGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGCATTTAG TCGTAATCACCGACATTGGG
Product: C4-dicarboxylate transporter/malic acid transport protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MSENTPIELSTEIGPNWFASVMGTGIIANAAIGLPMFGGHLSGIGLIIWLLASLMLITMILLKTIQTIIKPHIIKRQFND PVMSQFFGAPPMAMLTIAGGTLLYGQQVMAIDTAITIAWGLWIVGTLLGLVTAVIIPFRLFTHHQVRDDAAFGGWLMPVV PPMVSAAIGAMLIPHVESITLQQTLLYACYAMFGISLFSALIIITMIWSRLAHSGTSGGARVPTLWIVLGPLGQSITAAG ALGSVALLVVDEPISTGMNTMAILYGVPAWGFAFFWSILASLLTLRALRRKMPFALTWWAFTFPVGTCVTGTTQLALHTG LPAFEWAAVLLFTGLIFAWIIAAIGTIKGLKGGKIMKNPTTSSHVVSKKGQL
Sequences:
>Translated_372_residues MSENTPIELSTEIGPNWFASVMGTGIIANAAIGLPMFGGHLSGIGLIIWLLASLMLITMILLKTIQTIIKPHIIKRQFND PVMSQFFGAPPMAMLTIAGGTLLYGQQVMAIDTAITIAWGLWIVGTLLGLVTAVIIPFRLFTHHQVRDDAAFGGWLMPVV PPMVSAAIGAMLIPHVESITLQQTLLYACYAMFGISLFSALIIITMIWSRLAHSGTSGGARVPTLWIVLGPLGQSITAAG ALGSVALLVVDEPISTGMNTMAILYGVPAWGFAFFWSILASLLTLRALRRKMPFALTWWAFTFPVGTCVTGTTQLALHTG LPAFEWAAVLLFTGLIFAWIIAAIGTIKGLKGGKIMKNPTTSSHVVSKKGQL >Mature_371_residues SENTPIELSTEIGPNWFASVMGTGIIANAAIGLPMFGGHLSGIGLIIWLLASLMLITMILLKTIQTIIKPHIIKRQFNDP VMSQFFGAPPMAMLTIAGGTLLYGQQVMAIDTAITIAWGLWIVGTLLGLVTAVIIPFRLFTHHQVRDDAAFGGWLMPVVP PMVSAAIGAMLIPHVESITLQQTLLYACYAMFGISLFSALIIITMIWSRLAHSGTSGGARVPTLWIVLGPLGQSITAAGA LGSVALLVVDEPISTGMNTMAILYGVPAWGFAFFWSILASLLTLRALRRKMPFALTWWAFTFPVGTCVTGTTQLALHTGL PAFEWAAVLLFTGLIFAWIIAAIGTIKGLKGGKIMKNPTTSSHVVSKKGQL
Specific function: Unknown
COG id: COG1275
COG function: function code P; Tellurite resistance protein and related permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tellurite-resistance/dicarboxylate transporter (TDT) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004695 - InterPro: IPR011552 [H]
Pfam domain/function: PF03595 C4dic_mal_tran [H]
EC number: NA
Molecular weight: Translated: 39786; Mature: 39655
Theoretical pI: Translated: 10.17; Mature: 10.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSENTPIELSTEIGPNWFASVMGTGIIANAAIGLPMFGGHLSGIGLIIWLLASLMLITMI CCCCCCEEEECCCCHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH LLKTIQTIIKPHIIKRQFNDPVMSQFFGAPPMAMLTIAGGTLLYGQQVMAIDTAITIAWG HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHEECCCHHHHCCCHHHHHHHHHHHHH LWIVGTLLGLVTAVIIPFRLFTHHQVRDDAAFGGWLMPVVPPMVSAAIGAMLIPHVESIT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LQQTLLYACYAMFGISLFSALIIITMIWSRLAHSGTSGGARVPTLWIVLGPLGQSITAAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHH ALGSVALLVVDEPISTGMNTMAILYGVPAWGFAFFWSILASLLTLRALRRKMPFALTWWA HHHCEEEEEECCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHH FTFPVGTCVTGTTQLALHTGLPAFEWAAVLLFTGLIFAWIIAAIGTIKGLKGGKIMKNPT HHHCHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC TSSHVVSKKGQL CCHHHHHCCCCC >Mature Secondary Structure SENTPIELSTEIGPNWFASVMGTGIIANAAIGLPMFGGHLSGIGLIIWLLASLMLITMI CCCCCEEEECCCCHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH LLKTIQTIIKPHIIKRQFNDPVMSQFFGAPPMAMLTIAGGTLLYGQQVMAIDTAITIAWG HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHEECCCHHHHCCCHHHHHHHHHHHHH LWIVGTLLGLVTAVIIPFRLFTHHQVRDDAAFGGWLMPVVPPMVSAAIGAMLIPHVESIT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LQQTLLYACYAMFGISLFSALIIITMIWSRLAHSGTSGGARVPTLWIVLGPLGQSITAAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHH ALGSVALLVVDEPISTGMNTMAILYGVPAWGFAFFWSILASLLTLRALRRKMPFALTWWA HHHCEEEEEECCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHH FTFPVGTCVTGTTQLALHTGLPAFEWAAVLLFTGLIFAWIIAAIGTIKGLKGGKIMKNPT HHHCHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC TSSHVVSKKGQL CCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]