Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167623085

Identifier: 167623085

GI number: 167623085

Start: 1399603

End: 1400799

Strand: Direct

Name: 167623085

Synonym: Shal_1151

Alternate gene names: NA

Gene position: 1399603-1400799 (Clockwise)

Preceding gene: 167623084

Following gene: 167623086

Centisome position: 26.78

GC content: 46.37

Gene sequence:

>1197_bases
ATGACAACAATAATAACTAAACCCCAATCAAGTCTTATCGAGTCACACTTAAAATTACAGACTCAATCGATTGCCAAGTC
TGAAGCAAAGCCTAGGCTTAAGTCTTTAGATGCTTTGCGTGGCTTTGATATGTTCTGGATCTTAGGCGGCGAGGCCATTT
TTGCAGCGTTATTAGTACTGACTGGTTGGGCTGGCTTTAAGTGGTTTGATGGACAGATGCATCACAGTGTTTGGAATGGT
TTTACTTTCTACGATTTGATTTTCCCGCTGTTCATCTTCCTCTCAGGCGTCGCGCTAGGCTTATCACCGAAACGACTGGA
CAAGTTACCCCTGCCTCCGCGCTTGCCACTATACAAACATGCAATAAAGCGACTGTTCCTATTACTGCTTTTTGGCGTTA
TCTATAACCATGGTTGGGGCACCGGAGCATCGTTTGCTGTCGGTGATATTCGCTATGCTAGCGTACTGGGTAGAATTGCC
TTCGCATGGTTTTTCTGTGCACTTTTGGTTTGGCACACCAGTTTAAAAACTCAGATAGTGACTGCTATTGTCGTATTAGT
CGGTTACGCCTTGCTGCAAGCCTTCCCTATGATGACATTAGATAGCAGCGGCGCCTTTAGTCAAACAGGCTCAATTAACG
CCGCCGTCGATAGCCTGATATTGCCAGGCATAACTTATCAGAACGCTGCCGTCGATCCCGAGGGAATACTCTCGACCATT
CCCGCCGTCGTCAATGGCTTGTTTGGTGTCTTTGTCGGGCACTTTATCGTCAAGCCACACGTTAAAGGTGAGTGGTTTAA
GCTGGCGGTATTAGCCGCATCGGGTGTAGCCTTAGTTGCGCTGGGCTGGCTTATTTCTCCTCTTATCCCAGTGAATAAAA
CTCTGTGGACCAGCAGCTTTACCCTAGTGAGCTCAGGCTGGAGCATACTCTTCTTAGCCTTGTTTTACGCCGTTATTGAT
GTGGTCAAGGTGCAGAAATGGGCCTTTTTCTTTACGGTTATCGGCTGCAACTCCATTGTTATCTACATTGCGAGCAGTAT
CGTAAATTGGAAATACACCGCGCAAAGTTTATTTGGCCAACTGATCTCAGGCCTGCCTAATAATGCTCAGGCACTAGCTG
GTGTTATCACTCTACTGTTGGTGCAGTGGCTGGTGCTTTACTGGATGTATAAGCGAAACATCTTCATTAAGGTTTAA

Upstream 100 bases:

>100_bases
GGTTCCAATCAAAGTCTCTGTAGTGAATAGTAACTTGAAAAACACCGGAGACTTTGCTTTATAGTCAGTGCGTGAAAAGT
GGTAGAAAAGGGCTGTTTAA

Downstream 100 bases:

>100_bases
GCTATTAATACTCAGCCTTGATTAAGCTCTTTTAGCCGAAGGCGGCTAGGGGAGAGGTAATAGGTTCAAATTAGCTATTT
GAGTATAAATGACAGCGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MTTIITKPQSSLIESHLKLQTQSIAKSEAKPRLKSLDALRGFDMFWILGGEAIFAALLVLTGWAGFKWFDGQMHHSVWNG
FTFYDLIFPLFIFLSGVALGLSPKRLDKLPLPPRLPLYKHAIKRLFLLLLFGVIYNHGWGTGASFAVGDIRYASVLGRIA
FAWFFCALLVWHTSLKTQIVTAIVVLVGYALLQAFPMMTLDSSGAFSQTGSINAAVDSLILPGITYQNAAVDPEGILSTI
PAVVNGLFGVFVGHFIVKPHVKGEWFKLAVLAASGVALVALGWLISPLIPVNKTLWTSSFTLVSSGWSILFLALFYAVID
VVKVQKWAFFFTVIGCNSIVIYIASSIVNWKYTAQSLFGQLISGLPNNAQALAGVITLLLVQWLVLYWMYKRNIFIKV

Sequences:

>Translated_398_residues
MTTIITKPQSSLIESHLKLQTQSIAKSEAKPRLKSLDALRGFDMFWILGGEAIFAALLVLTGWAGFKWFDGQMHHSVWNG
FTFYDLIFPLFIFLSGVALGLSPKRLDKLPLPPRLPLYKHAIKRLFLLLLFGVIYNHGWGTGASFAVGDIRYASVLGRIA
FAWFFCALLVWHTSLKTQIVTAIVVLVGYALLQAFPMMTLDSSGAFSQTGSINAAVDSLILPGITYQNAAVDPEGILSTI
PAVVNGLFGVFVGHFIVKPHVKGEWFKLAVLAASGVALVALGWLISPLIPVNKTLWTSSFTLVSSGWSILFLALFYAVID
VVKVQKWAFFFTVIGCNSIVIYIASSIVNWKYTAQSLFGQLISGLPNNAQALAGVITLLLVQWLVLYWMYKRNIFIKV
>Mature_397_residues
TTIITKPQSSLIESHLKLQTQSIAKSEAKPRLKSLDALRGFDMFWILGGEAIFAALLVLTGWAGFKWFDGQMHHSVWNGF
TFYDLIFPLFIFLSGVALGLSPKRLDKLPLPPRLPLYKHAIKRLFLLLLFGVIYNHGWGTGASFAVGDIRYASVLGRIAF
AWFFCALLVWHTSLKTQIVTAIVVLVGYALLQAFPMMTLDSSGAFSQTGSINAAVDSLILPGITYQNAAVDPEGILSTIP
AVVNGLFGVFVGHFIVKPHVKGEWFKLAVLAASGVALVALGWLISPLIPVNKTLWTSSFTLVSSGWSILFLALFYAVIDV
VKVQKWAFFFTVIGCNSIVIYIASSIVNWKYTAQSLFGQLISGLPNNAQALAGVITLLLVQWLVLYWMYKRNIFIKV

Specific function: Unknown

COG id: COG4299

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Drosophila melanogaster, GI24639786, Length=376, Percent_Identity=25.2659574468085, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43884; Mature: 43752

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIITKPQSSLIESHLKLQTQSIAKSEAKPRLKSLDALRGFDMFWILGGEAIFAALLVL
CCCEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
TGWAGFKWFDGQMHHSVWNGFTFYDLIFPLFIFLSGVALGLSPKRLDKLPLPPRLPLYKH
HCCCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHH
AIKRLFLLLLFGVIYNHGWGTGASFAVGDIRYASVLGRIAFAWFFCALLVWHTSLKTQIV
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAIVVLVGYALLQAFPMMTLDSSGAFSQTGSINAAVDSLILPGITYQNAAVDPEGILSTI
HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHH
PAVVNGLFGVFVGHFIVKPHVKGEWFKLAVLAASGVALVALGWLISPLIPVNKTLWTSSF
HHHHHHHHHHHHHHHHHCCCCCCCHHEEEHHHHCCHHHHHHHHHHHCCCCCCHHHHCCCH
TLVSSGWSILFLALFYAVIDVVKVQKWAFFFTVIGCNSIVIYIASSIVNWKYTAQSLFGQ
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
LISGLPNNAQALAGVITLLLVQWLVLYWMYKRNIFIKV
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
>Mature Secondary Structure 
TTIITKPQSSLIESHLKLQTQSIAKSEAKPRLKSLDALRGFDMFWILGGEAIFAALLVL
CCEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
TGWAGFKWFDGQMHHSVWNGFTFYDLIFPLFIFLSGVALGLSPKRLDKLPLPPRLPLYKH
HCCCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHH
AIKRLFLLLLFGVIYNHGWGTGASFAVGDIRYASVLGRIAFAWFFCALLVWHTSLKTQIV
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAIVVLVGYALLQAFPMMTLDSSGAFSQTGSINAAVDSLILPGITYQNAAVDPEGILSTI
HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHH
PAVVNGLFGVFVGHFIVKPHVKGEWFKLAVLAASGVALVALGWLISPLIPVNKTLWTSSF
HHHHHHHHHHHHHHHHHCCCCCCCHHEEEHHHHCCHHHHHHHHHHHCCCCCCHHHHCCCH
TLVSSGWSILFLALFYAVIDVVKVQKWAFFFTVIGCNSIVIYIASSIVNWKYTAQSLFGQ
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
LISGLPNNAQALAGVITLLLVQWLVLYWMYKRNIFIKV
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA