| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is gluP [H]
Identifier: 167623086
GI number: 167623086
Start: 1401086
End: 1402399
Strand: Direct
Name: gluP [H]
Synonym: Shal_1152
Alternate gene names: 167623086
Gene position: 1401086-1402399 (Clockwise)
Preceding gene: 167623085
Following gene: 167623089
Centisome position: 26.81
GC content: 46.04
Gene sequence:
>1314_bases ATGACAGCAACGACTCAGGCTCAAGCTAGCCCTAAGAGCAGTTTACTGCCTATGACCATTATCGGTGTGTTATTTTTTAT CTTCGGATTTGTGACTTGGCTTAACGGCTCGCTAATCCCTTTTCTTAAAATCATCTGTGAGCTTAATGAATTCCAAGCCT TGTTTGTGACGTTTGCTTTTTACATTGCTTATACCGTGATGGCTCTGCCGATGTCATCGATACTTAAAAAAACTGGCTAC AAAAACGGTATGGCTATTGGTTTGGCTATTATGGTTGTCGGCTCATTACTGTTTATCCCAGCGGCGCAGAGCGCAAACTT TACCCTATTCCTTGGTGCTCTGTTTGTATTAGGTACGGGCTTGACCATTTTGCAAACCGCATCAAATCCTTATGTAGTGC ATATCGGCCCTAAAGAAAGTGCCGCGATGCGAATTAGTATCATGGGGCTTATCAATAAAGGTGCGGGCGTTATCGTGCCA ATCTTGTTTACTGCATTAGTGCTGTCAGGCTTTGAAAACTTCACCGCAGATCACTTAGCGGCATTGAGTGAGGCTGACCG CCTAGCACAAATTAGTGAGTTATCTTCAAGATTGGTTATGCCATACATCTATATGGCTGTGGCGCTGACTTTCCTAATTG GTTTAGTCAAGTTCTCATCGCTTCCAGAGCTTGAGTTTGAAGCGGCAGAAGATCATCAAGAAAAAGGCAGCATTACTCAT TTCCCTCAGGTGATCCTTGGCGCAGTCGCCTTGTTTGCCTATGTCGGTGTGGAAGTGATTGCCGGTGACACTATTGGTTT GTACGGTGAAAGCTTAGGGGTTCATAACTTTGCCTCACTAACGTCTTACACCATGGTGTTTATGGTATTTGGCTACATTA TTGGTGTGACCTGTATTCCTAAGTTCATTAGCCAAGAGAAAGCTTTGCTTGGCTCTGCAATCGCTGGGATCCTCTGTATT GTCGGTGCGGCGCTAGGTTCGCGTGAAAGCACACTGATGGCCGATATCCTTTGGGGCTGGAGTGGTATTCCTGTGATCCC TAACACCGTCACCTTTGTCGCGTTAATGGGATTGGCACATGCACTAGTCTGGCCTTCAATTTGGCCTCTAGCACTAGAGG GCCTAGGTAAGTATACGGCTCAAGGCTCGGCACTGCTGATCATGGGGATCTCGGGTGGCGCAATACTGCCGCTAATTTTT GGTAAGGTAGCCTATTTTGCTGACAATACTCAGGTTGCTTATTGGGTCGGTCTGCCTTGTTATCTGTTCATCCTGTTTTA TGCGCTAAAAGGCCATAAGATGCGTAGCTGGTAA
Upstream 100 bases:
>100_bases AGATGATAAGCTGCTTAGGTAAAGCGGTAACAATGAAGGATGGGGTAGCAGTTTAATCTGGTATCATAAAATTAATTACT ATAAGAAGCAGGTTTAATAC
Downstream 100 bases:
>100_bases ATACTCGACACAAGCTCTATTTTGATTGGAGCAGTTATAAAGGAGCCTAAGGGCTCCTTTTTTGTTTTTAGTCATGATAA ATAGAGAAAAGCTAAGACGG
Product: glucose/galactose transporter
Products: Proton [Cytoplasm]; L-fucose [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MTATTQAQASPKSSLLPMTIIGVLFFIFGFVTWLNGSLIPFLKIICELNEFQALFVTFAFYIAYTVMALPMSSILKKTGY KNGMAIGLAIMVVGSLLFIPAAQSANFTLFLGALFVLGTGLTILQTASNPYVVHIGPKESAAMRISIMGLINKGAGVIVP ILFTALVLSGFENFTADHLAALSEADRLAQISELSSRLVMPYIYMAVALTFLIGLVKFSSLPELEFEAAEDHQEKGSITH FPQVILGAVALFAYVGVEVIAGDTIGLYGESLGVHNFASLTSYTMVFMVFGYIIGVTCIPKFISQEKALLGSAIAGILCI VGAALGSRESTLMADILWGWSGIPVIPNTVTFVALMGLAHALVWPSIWPLALEGLGKYTAQGSALLIMGISGGAILPLIF GKVAYFADNTQVAYWVGLPCYLFILFYALKGHKMRSW
Sequences:
>Translated_437_residues MTATTQAQASPKSSLLPMTIIGVLFFIFGFVTWLNGSLIPFLKIICELNEFQALFVTFAFYIAYTVMALPMSSILKKTGY KNGMAIGLAIMVVGSLLFIPAAQSANFTLFLGALFVLGTGLTILQTASNPYVVHIGPKESAAMRISIMGLINKGAGVIVP ILFTALVLSGFENFTADHLAALSEADRLAQISELSSRLVMPYIYMAVALTFLIGLVKFSSLPELEFEAAEDHQEKGSITH FPQVILGAVALFAYVGVEVIAGDTIGLYGESLGVHNFASLTSYTMVFMVFGYIIGVTCIPKFISQEKALLGSAIAGILCI VGAALGSRESTLMADILWGWSGIPVIPNTVTFVALMGLAHALVWPSIWPLALEGLGKYTAQGSALLIMGISGGAILPLIF GKVAYFADNTQVAYWVGLPCYLFILFYALKGHKMRSW >Mature_436_residues TATTQAQASPKSSLLPMTIIGVLFFIFGFVTWLNGSLIPFLKIICELNEFQALFVTFAFYIAYTVMALPMSSILKKTGYK NGMAIGLAIMVVGSLLFIPAAQSANFTLFLGALFVLGTGLTILQTASNPYVVHIGPKESAAMRISIMGLINKGAGVIVPI LFTALVLSGFENFTADHLAALSEADRLAQISELSSRLVMPYIYMAVALTFLIGLVKFSSLPELEFEAAEDHQEKGSITHF PQVILGAVALFAYVGVEVIAGDTIGLYGESLGVHNFASLTSYTMVFMVFGYIIGVTCIPKFISQEKALLGSAIAGILCIV GAALGSRESTLMADILWGWSGIPVIPNTVTFVALMGLAHALVWPSIWPLALEGLGKYTAQGSALLIMGISGGAILPLIFG KVAYFADNTQVAYWVGLPCYLFILFYALKGHKMRSW
Specific function: Intake of glucose and galactose (Potential) [H]
COG id: COG0738
COG function: function code G; Fucose permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. FHS transporter (TC 2.A.1.7) family [H]
Homologues:
Organism=Escherichia coli, GI1789166, Length=449, Percent_Identity=27.1714922048998, Blast_Score=139, Evalue=2e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005964 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 46839; Mature: 46708
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATTQAQASPKSSLLPMTIIGVLFFIFGFVTWLNGSLIPFLKIICELNEFQALFVTFAF CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH YIAYTVMALPMSSILKKTGYKNGMAIGLAIMVVGSLLFIPAAQSANFTLFLGALFVLGTG HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC LTILQTASNPYVVHIGPKESAAMRISIMGLINKGAGVIVPILFTALVLSGFENFTADHLA CCEEEECCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCHHHCCHHHHH ALSEADRLAQISELSSRLVMPYIYMAVALTFLIGLVKFSSLPELEFEAAEDHQEKGSITH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCH FPQVILGAVALFAYVGVEVIAGDTIGLYGESLGVHNFASLTSYTMVFMVFGYIIGVTCIP HHHHHHHHHHHHHHHHHHHEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KFISQEKALLGSAIAGILCIVGAALGSRESTLMADILWGWSGIPVIPNTVTFVALMGLAH HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH ALVWPSIWPLALEGLGKYTAQGSALLIMGISGGAILPLIFGKVAYFADNTQVAYWVGLPC HHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHEECCCEEEEEECHHH YLFILFYALKGHKMRSW HHHHHHHHHCCCCCCCC >Mature Secondary Structure TATTQAQASPKSSLLPMTIIGVLFFIFGFVTWLNGSLIPFLKIICELNEFQALFVTFAF CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH YIAYTVMALPMSSILKKTGYKNGMAIGLAIMVVGSLLFIPAAQSANFTLFLGALFVLGTG HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC LTILQTASNPYVVHIGPKESAAMRISIMGLINKGAGVIVPILFTALVLSGFENFTADHLA CCEEEECCCCEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCHHHCCHHHHH ALSEADRLAQISELSSRLVMPYIYMAVALTFLIGLVKFSSLPELEFEAAEDHQEKGSITH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCH FPQVILGAVALFAYVGVEVIAGDTIGLYGESLGVHNFASLTSYTMVFMVFGYIIGVTCIP HHHHHHHHHHHHHHHHHHHEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KFISQEKALLGSAIAGILCIVGAALGSRESTLMADILWGWSGIPVIPNTVTFVALMGLAH HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH ALVWPSIWPLALEGLGKYTAQGSALLIMGISGGAILPLIFGKVAYFADNTQVAYWVGLPC HHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHEECCCEEEEEECHHH YLFILFYALKGHKMRSW HHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; L-fucose [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-fucose [Periplasm] = Proton [Cytoplasm] + L-fucose [Cytoplasm] [C]
General reaction: Permease [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9168605 [H]