| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623058
Identifier: 167623058
GI number: 167623058
Start: 1364332
End: 1366698
Strand: Reverse
Name: 167623058
Synonym: Shal_1124
Alternate gene names: NA
Gene position: 1366698-1364332 (Counterclockwise)
Preceding gene: 167623062
Following gene: 167623057
Centisome position: 26.15
GC content: 45.5
Gene sequence:
>2367_bases ATGGCACATCAGCAAGAAATTGTCGCACTTAAGAAATTTGTTCGAGCAACTAACTTTCTGGCGACATCACAAATTTATTT AAAGAAAAACGTGCTGCATAAACGCGCACTTGAACACTCCGATATTAAGCCTAGGCTACTTGGTCACTGGGGAACGTGCC CAGGTATCAATTTTGTCTACGCTAACGTTAACAGGCTCATCACCAAGCACAACCGCTCATTCGTTTATTTAGTTGGCCCC GGCCATGGCTTTCCAGCTGTTCAAGCAAACTTGTTTATGGAAGGCTCCTTAAGCCACTTCTACCCCGATACCATTCCATA TAATGAAGACGGGATCACCGATATCTGCCAGAAGTTCTCTGCCGCTTATGGTTACCCTTCGCATGCGAACCCTGAAGCGC CAGGCCAAATCCTTGAAGGTGGTGAACTAGGCTATTCACTTTCTGTTGCTTGGGGCGCTGTTTTAGATAATCCAGATCTG ATTGCCGCTTGCCTTATCGGTGACGGTGAGTCAGAAACCGGCCCACTAGCTGCCTCTTGGTATGCGAACCGTTTAGTGTC TGCAAAGAATAATGGTGCTGTTTTACCTATTGTTCATATCAACGGTTATAAGATTTCGGGTCCGACTCGTATGGGTCGTA TGAGCCATGAAGAACTCGATCTTGAATTTAGAGGTCTAGGTTACCATCCCATTATTGTTGATGATCAATTAGAAGAAGAC GTTTATCTTCAGATGGCTGCCGCAATGGATAAGTCATACGAAATGATCAATGACATCCAAACCCGCGCTCGTGCAGGTGA AGATATCGTTAAGCCACGCTGGCCAGTGATCTTAATGCGTACCGCTAAAGGCTGGACGGGTACTGCCGAGTTTGATGGTA AGAAATTAGAAGGTAACTGTGAATCCCACCAGGTTATCGTCAACAAATGTGCTAGCAACAAAGGTCACCTCGATGCACTA AATACTTGGCTTGCGAGCTACAAGTTTAATGAGCTTTATAGTATCAATGAAAAAGGCGAGCTGATCTTCGACGAAGATAT TCAGTCCCTTCTACCACCAAAAGAACTAACCTGTGGTCGCCAGCATTTAAGTTATGGTGGTGAAGTGGTTCGCGCACTCG CTAAACCTGATCTAGAAAAGCTTGCCTATGGTCCTGAAACCCCTCGCGGCCATCGCGGCTTATCTATGTATAAGATGGGC GAATGGATGCGTGATGCATTTAAGCTTAACCGCGATCAGCGTAACTTACGTATTTTCTGTCCAGATGAAACCTATTCAAA TCAACTACAAGCCGTATTTGAAGAGACGAGCCGTGCATGGCAGTGGCCTATCGAAAGCTGGGATGAAGATATGTCTCGTG ACGGTCGAGTCATCGAGTTGCTATCAGAAAACCTATTATTCGGTATGTTACACGGCTACACAGTAACGGGTCGCCATGCC ATGTTCCCAACTTATGAGGCGTTCTCACAAGTTGTTTCTTCAATGGCCGACCAATACTGTAAATATGTATATGCGAGCCA AGGCGTACATTTCCGTAAGCCTGTTCCTGCTTGTAACGTAGTTTTATCCTCACTACTTGAGCGCCAAGATCACAACGGTT ATTCACATCAAAACCCCTCTTTCTTGGGTGCGATGCTTGAGAAACACCCGAAGATTATCTCAGCTTACCTTCCTGCAGAT GGTAACAGCACCTTAGTTTATACTGAGCGCGCTTATGCCGATCGCGACAAGCTCAACATCTTAGTGGCGGGTAAGAAAGA TCTACCACAGTGGCTAACACTCGATGAGGCTCGTCAACAAGCAAAAGATGGTGTCATGGTTTGGGATTTCGCATCAGATG AAAACCCAGATGTGGTACTTGTCGGTTGTGGTGATTATGTCACTCAAGAGGCGATGGCTGCACTGGTGCTTATTCGTGAG CTGCTACCACGTGTACGCATTCGCTTTGTCAGTGTTACAGAACTCACAAGTAGTGGTTTAGGTAGCTTAGAGTTCCAAGC TAAGCCTTGGTTGATGGATGAAGTATTCACGGCAGATAAAGGTGTAGTATTCAATTATCACGGTTATCCAAACACGATTA AGAAACTAGTGTTTGATTATAAAGGTAGCAAGCGCTTCAGAATTAAAGGCTATGAAGAGGAAGGCTCAACAACAACTCCA TTTGATATGGGCGTTCGTAATGGCACATCACGTTACCATCTAGTCATTGATATGGCATACAAGCTCTTCCAGAGCAGCGT GATTGACGAGTCTCAACACGTGGCTATCACCACCGACATGCTGCAACGCTTAGTCGACCATAGAAATTACATCAAGGCCA ACGGTGTTGATCCTGAAAGCATCGAAAACTGGGTTTGGACACGTTAA
Upstream 100 bases:
>100_bases CAATAAATCAGATATTGCACACGTTTTTGTAATAAAATTACAAATATAGTGAGTTATATAAAATTTGTTTAACTTTATGA TTACGTAAATGGGGTTATTT
Downstream 100 bases:
>100_bases CTCTTTATCTATTTTGAGTTGTAATTTTCAATCAATCAAAGGGCGCTTTTAAAGCGCCCTTTTTTTATGCAACTTTAGTT CTCTATGATATTTCACAATT
Product: putative phosphoketolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 787
Protein sequence:
>788_residues MAHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVYANVNRLITKHNRSFVYLVGP GHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFSAAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDL IAACLIGDGESETGPLAASWYANRLVSAKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFDGKKLEGNCESHQVIVNKCASNKGHLDAL NTWLASYKFNELYSINEKGELIFDEDIQSLLPPKELTCGRQHLSYGGEVVRALAKPDLEKLAYGPETPRGHRGLSMYKMG EWMRDAFKLNRDQRNLRIFCPDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPAD GNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLDEARQQAKDGVMVWDFASDENPDVVLVGCGDYVTQEAMAALVLIRE LLPRVRIRFVSVTELTSSGLGSLEFQAKPWLMDEVFTADKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP FDMGVRNGTSRYHLVIDMAYKLFQSSVIDESQHVAITTDMLQRLVDHRNYIKANGVDPESIENWVWTR
Sequences:
>Translated_788_residues MAHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVYANVNRLITKHNRSFVYLVGP GHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFSAAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDL IAACLIGDGESETGPLAASWYANRLVSAKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFDGKKLEGNCESHQVIVNKCASNKGHLDAL NTWLASYKFNELYSINEKGELIFDEDIQSLLPPKELTCGRQHLSYGGEVVRALAKPDLEKLAYGPETPRGHRGLSMYKMG EWMRDAFKLNRDQRNLRIFCPDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPAD GNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLDEARQQAKDGVMVWDFASDENPDVVLVGCGDYVTQEAMAALVLIRE LLPRVRIRFVSVTELTSSGLGSLEFQAKPWLMDEVFTADKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP FDMGVRNGTSRYHLVIDMAYKLFQSSVIDESQHVAITTDMLQRLVDHRNYIKANGVDPESIENWVWTR >Mature_787_residues AHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVYANVNRLITKHNRSFVYLVGPG HGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFSAAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDLI AACLIGDGESETGPLAASWYANRLVSAKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEEDV YLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFDGKKLEGNCESHQVIVNKCASNKGHLDALN TWLASYKFNELYSINEKGELIFDEDIQSLLPPKELTCGRQHLSYGGEVVRALAKPDLEKLAYGPETPRGHRGLSMYKMGE WMRDAFKLNRDQRNLRIFCPDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHAM FPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPADG NSTLVYTERAYADRDKLNILVAGKKDLPQWLTLDEARQQAKDGVMVWDFASDENPDVVLVGCGDYVTQEAMAALVLIREL LPRVRIRFVSVTELTSSGLGSLEFQAKPWLMDEVFTADKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTPF DMGVRNGTSRYHLVIDMAYKLFQSSVIDESQHVAITTDMLQRLVDHRNYIKANGVDPESIENWVWTR
Specific function: Unknown
COG id: COG3957
COG function: function code G; Phosphoketolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the XFP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR005593 - InterPro: IPR018969 - InterPro: IPR019790 - InterPro: IPR018970 - InterPro: IPR019789 [H]
Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N [H]
EC number: NA
Molecular weight: Translated: 88907; Mature: 88776
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: PS60002 PHOSPHOKETOLASE_1 ; PS60003 PHOSPHOKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEE ANVNRLITKHNRSFVYLVGPGHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFS ECHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHH AAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDLIAACLIGDGESETGPLAASW HHCCCCCCCCCCCCCHHCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEHHH YANRLVSAKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED HHHHHHCCCCCCCEEEEEEECCEEECCCCHHCCCCCHHCCEEEECCCCCCEEECCCCCHH VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFDGKKLEGNC HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC ESHQVIVNKCASNKGHLDALNTWLASYKFNELYSINEKGELIFDEDIQSLLPPKELTCGR CHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEECCCHHHHCCCHHHCCCH QHLSYGGEVVRALAKPDLEKLAYGPETPRGHRGLSMYKMGEWMRDAFKLNRDQRNLRIFC HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE PDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA CCCHHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCCCC MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCHH FLGAMLEKHPKIISAYLPADGNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLDEARQQ HHHHHHHHCCCEEEEEECCCCCCEEEEEEHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH AKDGVMVWDFASDENPDVVLVGCGDYVTQEAMAALVLIRELLPRVRIRFVSVTELTSSGL HHCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHCCCC GSLEFQAKPWLMDEVFTADKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP CCEEECCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC FDMGVRNGTSRYHLVIDMAYKLFQSSVIDESQHVAITTDMLQRLVDHRNYIKANGVDPES HHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCEEEECCCCHHH IENWVWTR HHHCCCCC >Mature Secondary Structure AHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEE ANVNRLITKHNRSFVYLVGPGHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFS ECHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHH AAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDLIAACLIGDGESETGPLAASW HHCCCCCCCCCCCCCHHCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEHHH YANRLVSAKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED HHHHHHCCCCCCCEEEEEEECCEEECCCCHHCCCCCHHCCEEEECCCCCCEEECCCCCHH VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFDGKKLEGNC HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC ESHQVIVNKCASNKGHLDALNTWLASYKFNELYSINEKGELIFDEDIQSLLPPKELTCGR CHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEECCCHHHHCCCHHHCCCH QHLSYGGEVVRALAKPDLEKLAYGPETPRGHRGLSMYKMGEWMRDAFKLNRDQRNLRIFC HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE PDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA CCCHHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCCCC MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCHH FLGAMLEKHPKIISAYLPADGNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLDEARQQ HHHHHHHHCCCEEEEEECCCCCCEEEEEEHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH AKDGVMVWDFASDENPDVVLVGCGDYVTQEAMAALVLIRELLPRVRIRFVSVTELTSSGL HHCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHCCCC GSLEFQAKPWLMDEVFTADKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP CCEEECCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC FDMGVRNGTSRYHLVIDMAYKLFQSSVIDESQHVAITTDMLQRLVDHRNYIKANGVDPES HHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCEEEECCCCHHH IENWVWTR HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]