| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yeaR [H]
Identifier: 167622876
GI number: 167622876
Start: 1154279
End: 1154614
Strand: Direct
Name: yeaR [H]
Synonym: Shal_0936
Alternate gene names: 167622876
Gene position: 1154279-1154614 (Clockwise)
Preceding gene: 167622874
Following gene: 167622880
Centisome position: 22.08
GC content: 44.94
Gene sequence:
>336_bases ATGACTAAGATCCCTACTGATTACGTTAATTATAAATCCACACCGGTATTTGAAAAAGATAATGTGCCCAAGATGTTTCT TCATCTGCATAACACTAAGGCTGGCGTCTACGGTCAAATTCAGGTGTTAAGCGGAGCGCTTAAGTTCTACGGGTTCAGAG ATAGGCGAGGTGAGGTGGAGCAAGAGCTCATTCTCAAGGCCGGCGATACAGGGGTGTCACCTCCTCAGTATTGGCACAAG GTGGAGTTTCTCACCGATGATACACAATTTAGAGTCGATTTTTGGGCGCAACAGAGCTCAGATATTGTTGTTCAAAACCT ATCTGAGCGTGATTGA
Upstream 100 bases:
>100_bases TATCGGTATAAGTGCGGCTGATTATAGTGCTTAGTTTGCTGATAGTCGCTTAACTTGAGCTTAAATAGCATTAATTAGAT TTTATATATAAGGATTGAGT
Downstream 100 bases:
>100_bases AGCCTTCAATTATTACGACTTTATTGGGAGAAAGTTGGGGGAATTAGTGCAGGTGGGGCTTGATCGCTAAGATATCGCAT TTAAGTTCATCGACGAGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 111; Mature: 110
Protein sequence:
>111_residues MTKIPTDYVNYKSTPVFEKDNVPKMFLHLHNTKAGVYGQIQVLSGALKFYGFRDRRGEVEQELILKAGDTGVSPPQYWHK VEFLTDDTQFRVDFWAQQSSDIVVQNLSERD
Sequences:
>Translated_111_residues MTKIPTDYVNYKSTPVFEKDNVPKMFLHLHNTKAGVYGQIQVLSGALKFYGFRDRRGEVEQELILKAGDTGVSPPQYWHK VEFLTDDTQFRVDFWAQQSSDIVVQNLSERD >Mature_110_residues TKIPTDYVNYKSTPVFEKDNVPKMFLHLHNTKAGVYGQIQVLSGALKFYGFRDRRGEVEQELILKAGDTGVSPPQYWHKV EFLTDDTQFRVDFWAQQSSDIVVQNLSERD
Specific function: Unknown
COG id: COG3615
COG function: function code P; Uncharacterized protein/domain, possibly involved in tellurite resistance
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788098, Length=114, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015392 - InterPro: IPR014710 - InterPro: IPR014510 [H]
Pfam domain/function: PF09313 DUF1971 [H]
EC number: NA
Molecular weight: Translated: 12857; Mature: 12725
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKIPTDYVNYKSTPVFEKDNVPKMFLHLHNTKAGVYGQIQVLSGALKFYGFRDRRGEVE CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCCCC QELILKAGDTGVSPPQYWHKVEFLTDDTQFRVDFWAQQSSDIVVQNLSERD HHHEEECCCCCCCCHHHHEEEEEEECCCEEEEEEECCCCCCEEEECCCCCC >Mature Secondary Structure TKIPTDYVNYKSTPVFEKDNVPKMFLHLHNTKAGVYGQIQVLSGALKFYGFRDRRGEVE CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCCCC QELILKAGDTGVSPPQYWHKVEFLTDDTQFRVDFWAQQSSDIVVQNLSERD HHHEEECCCCCCCCHHHHEEEEEEECCCEEEEEEECCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]