| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622746
Identifier: 167622746
GI number: 167622746
Start: 1002450
End: 1003664
Strand: Direct
Name: 167622746
Synonym: Shal_0806
Alternate gene names: NA
Gene position: 1002450-1003664 (Clockwise)
Preceding gene: 167622745
Following gene: 167622749
Centisome position: 19.18
GC content: 48.23
Gene sequence:
>1215_bases ATGGTTATGTTTCAAATTTTTCTACGTTTTTTCTCGTTAGGGTTAGTGTCATTTGGTGGACCCGCGGCGCACATCGGTTA CTTTAGACAGACTTTTGTGCAGGAGCTTAATTGGCTCGATGACAAACACTATGGCAGTCTCGTTGCGCTAAGTCAGTTTA TGCCTGGACCGGGTTCGAGTCAGGTGGGTTTTGCCATCGGTTATCATCGCGGTGGTCTGTTGGGCGCTATTGCTGCCTTT ATAGGGTTTACCTTACCTTCGTTTATTCTATTGTTTTTGCTTGCCGTCACCAGTAGTCAATGGCTGGAATACTCATTTAC TCAAGGGATTATCCACGGGCTTAAGTTATTGGCTGTAGTGGTAGTTGCTGATGCGATTTGGATCATGTTCAAGCAGTTTT GTCAGCGTAAGCAGGCTAAATTATTGATGCTGCTAAGCTGCGCGATTATCTTGTTGCAGCCTTCGATGTTAGTGCAGTTT GGCTTGCTCATCAGCGCCGCCATGGTGGGGCGATATTACCTATCTGCTGAGCCGGATGAGGGCGTGGCTACAACTGCAAC GAAAGCCGCAACAAAAACCACAGTACAGCAACCGATAAAGCTTAACTTCTTTTGGTTAAGTCTCTTCAGTGGCTTATTGA TCGCGTCATTGGTGGTTATCGGCCTATCTAAGCAAGCAGGGATCTCGAATTTAACTGAGTTGTTTAGCCAGTTCTACCAA GTGGGTAGTATGGTATTTGGTGGTGGGCATGTGGTGCTGCCTCTACTACAATCGAGTGTTGGCGATACCATGAGTAACGA TCAGTTTTTAACGGGGTACGCCTTAGCACAGGCGGTACCGGGGCCTATGTTTGCCTTGGCGGCATTTTTAGGGGCTGAGA TCTGGGTGGAGCAGCCGTTAATTGGCGCCTTAGTAGCTACACTGGCTATCTTTCTGCCGGGCTTCTTACTCATGCTGGTG GCACTTAAAAGCTGGCATGCACTCAGTGCAAGGCCACAAGTGATTGGCGCCGTTGCAGGAGTCAATGCCTGCGTGGTGGG CTTCTTGTTGGCGGCGCTGTATAGCCCCATCTTTATCAGCGCAGTGTTATCGCCACTGGATATGGCCTTGGTAGTATTAG GTTTTGGTCTGTTTAAAATCTTTAAGCCCAATATTTTTATCTTAGTGACAGGTTTTGGCGTGACAGGGGCGGTAATAGGC GCGTTTGCTGGCTAG
Upstream 100 bases:
>100_bases CAAGCTCATGAGTTTCATTATTCTGTAACCTTAGTGTCATATTCTTGATGGGTTGTTATTTTGAATAGTTTGTTTTTAAA GTGCATGAGCGCACAGATGG
Downstream 100 bases:
>100_bases CCTCCTTAGAGGTCCAGATAAATAAAAAGGCGGTAAGAGCATGCTCTTACCGCCTTTTTTGATCGACTATGATTCTAGCT AGACGAGTTCTGCCTCGGCT
Product: chromate transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MVMFQIFLRFFSLGLVSFGGPAAHIGYFRQTFVQELNWLDDKHYGSLVALSQFMPGPGSSQVGFAIGYHRGGLLGAIAAF IGFTLPSFILLFLLAVTSSQWLEYSFTQGIIHGLKLLAVVVVADAIWIMFKQFCQRKQAKLLMLLSCAIILLQPSMLVQF GLLISAAMVGRYYLSAEPDEGVATTATKAATKTTVQQPIKLNFFWLSLFSGLLIASLVVIGLSKQAGISNLTELFSQFYQ VGSMVFGGGHVVLPLLQSSVGDTMSNDQFLTGYALAQAVPGPMFALAAFLGAEIWVEQPLIGALVATLAIFLPGFLLMLV ALKSWHALSARPQVIGAVAGVNACVVGFLLAALYSPIFISAVLSPLDMALVVLGFGLFKIFKPNIFILVTGFGVTGAVIG AFAG
Sequences:
>Translated_404_residues MVMFQIFLRFFSLGLVSFGGPAAHIGYFRQTFVQELNWLDDKHYGSLVALSQFMPGPGSSQVGFAIGYHRGGLLGAIAAF IGFTLPSFILLFLLAVTSSQWLEYSFTQGIIHGLKLLAVVVVADAIWIMFKQFCQRKQAKLLMLLSCAIILLQPSMLVQF GLLISAAMVGRYYLSAEPDEGVATTATKAATKTTVQQPIKLNFFWLSLFSGLLIASLVVIGLSKQAGISNLTELFSQFYQ VGSMVFGGGHVVLPLLQSSVGDTMSNDQFLTGYALAQAVPGPMFALAAFLGAEIWVEQPLIGALVATLAIFLPGFLLMLV ALKSWHALSARPQVIGAVAGVNACVVGFLLAALYSPIFISAVLSPLDMALVVLGFGLFKIFKPNIFILVTGFGVTGAVIG AFAG >Mature_404_residues MVMFQIFLRFFSLGLVSFGGPAAHIGYFRQTFVQELNWLDDKHYGSLVALSQFMPGPGSSQVGFAIGYHRGGLLGAIAAF IGFTLPSFILLFLLAVTSSQWLEYSFTQGIIHGLKLLAVVVVADAIWIMFKQFCQRKQAKLLMLLSCAIILLQPSMLVQF GLLISAAMVGRYYLSAEPDEGVATTATKAATKTTVQQPIKLNFFWLSLFSGLLIASLVVIGLSKQAGISNLTELFSQFYQ VGSMVFGGGHVVLPLLQSSVGDTMSNDQFLTGYALAQAVPGPMFALAAFLGAEIWVEQPLIGALVATLAIFLPGFLLMLV ALKSWHALSARPQVIGAVAGVNACVVGFLLAALYSPIFISAVLSPLDMALVVLGFGLFKIFKPNIFILVTGFGVTGAVIG AFAG
Specific function: Unknown
COG id: COG2059
COG function: function code P; Chromate transport protein ChrA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003370 - InterPro: IPR014047 [H]
Pfam domain/function: PF02417 Chromate_transp [H]
EC number: NA
Molecular weight: Translated: 43172; Mature: 43172
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVMFQIFLRFFSLGLVSFGGPAAHIGYFRQTFVQELNWLDDKHYGSLVALSQFMPGPGSS CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC QVGFAIGYHRGGLLGAIAAFIGFTLPSFILLFLLAVTSSQWLEYSFTQGIIHGLKLLAVV CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVADAIWIMFKQFCQRKQAKLLMLLSCAIILLQPSMLVQFGLLISAAMVGRYYLSAEPDE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GVATTATKAATKTTVQQPIKLNFFWLSLFSGLLIASLVVIGLSKQAGISNLTELFSQFYQ CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VGSMVFGGGHVVLPLLQSSVGDTMSNDQFLTGYALAQAVPGPMFALAAFLGAEIWVEQPL HHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCH IGALVATLAIFLPGFLLMLVALKSWHALSARPQVIGAVAGVNACVVGFLLAALYSPIFIS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVLSPLDMALVVLGFGLFKIFKPNIFILVTGFGVTGAVIGAFAG HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCC >Mature Secondary Structure MVMFQIFLRFFSLGLVSFGGPAAHIGYFRQTFVQELNWLDDKHYGSLVALSQFMPGPGSS CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC QVGFAIGYHRGGLLGAIAAFIGFTLPSFILLFLLAVTSSQWLEYSFTQGIIHGLKLLAVV CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVADAIWIMFKQFCQRKQAKLLMLLSCAIILLQPSMLVQFGLLISAAMVGRYYLSAEPDE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GVATTATKAATKTTVQQPIKLNFFWLSLFSGLLIASLVVIGLSKQAGISNLTELFSQFYQ CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VGSMVFGGGHVVLPLLQSSVGDTMSNDQFLTGYALAQAVPGPMFALAAFLGAEIWVEQPL HHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCH IGALVATLAIFLPGFLLMLVALKSWHALSARPQVIGAVAGVNACVVGFLLAALYSPIFIS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVLSPLDMALVVLGFGLFKIFKPNIFILVTGFGVTGAVIGAFAG HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]