Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167622614

Identifier: 167622614

GI number: 167622614

Start: 832344

End: 832685

Strand: Direct

Name: 167622614

Synonym: Shal_0674

Alternate gene names: NA

Gene position: 832344-832685 (Clockwise)

Preceding gene: 167622612

Following gene: 167622615

Centisome position: 15.92

GC content: 40.94

Gene sequence:

>342_bases
ATGTCAGGATTGGATAAAACACAGTTAATTGAATTGCTTGAATACCCTAGGCGTCGAATTCTTCAGTCAATGGAGCTGAA
CTACTGTCCCCATGCTGGGTTCTTTAATCACACCGATATGGAGTGTATTAATTGCCACCAGGGTATGGAATGTACTTGGA
TGAATCATAACGATGAAACGATTGCCGTTGAGAGAAAGTCGGTTGCAGATCTGAAGCAACAGCTATTAGTTGCGGTTGAT
TTTATTGATTCGAGTTTAACTCCACATCACCTATCCCGTCGCCAATGTGAATGTGAAAACTGTGTATGGTTAAAGAAAGT
GCAACAAGTGCTCAATGTGTAA

Upstream 100 bases:

>100_bases
ACATCAAACCTGCAGGAATAAGAGGAGGGTAATCTTTAACTCGTACTAGTATAAATGATATAAGCCAGGTAAAAGGCTTG
GATATCAACCAGAGGTGGCT

Downstream 100 bases:

>100_bases
ATGAGTGTCTAGTTTGGAGTGAGTACTTTAAGTGAACCGCATTTATTTTTGCTTCTGCTCAACTCTGTCTATAGAGTGAA
GGCCATAGTGGTATACCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MSGLDKTQLIELLEYPRRRILQSMELNYCPHAGFFNHTDMECINCHQGMECTWMNHNDETIAVERKSVADLKQQLLVAVD
FIDSSLTPHHLSRRQCECENCVWLKKVQQVLNV

Sequences:

>Translated_113_residues
MSGLDKTQLIELLEYPRRRILQSMELNYCPHAGFFNHTDMECINCHQGMECTWMNHNDETIAVERKSVADLKQQLLVAVD
FIDSSLTPHHLSRRQCECENCVWLKKVQQVLNV
>Mature_112_residues
SGLDKTQLIELLEYPRRRILQSMELNYCPHAGFFNHTDMECINCHQGMECTWMNHNDETIAVERKSVADLKQQLLVAVDF
IDSSLTPHHLSRRQCECENCVWLKKVQQVLNV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13218; Mature: 13087

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
6.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLDKTQLIELLEYPRRRILQSMELNYCPHAGFFNHTDMECINCHQGMECTWMNHNDET
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCE
IAVERKSVADLKQQLLVAVDFIDSSLTPHHLSRRQCECENCVWLKKVQQVLNV
EEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SGLDKTQLIELLEYPRRRILQSMELNYCPHAGFFNHTDMECINCHQGMECTWMNHNDET
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCE
IAVERKSVADLKQQLLVAVDFIDSSLTPHHLSRRQCECENCVWLKKVQQVLNV
EEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA