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The map label for this gene is tdcF [C]

Identifier: 167622329

GI number: 167622329

Start: 456021

End: 456404

Strand: Reverse

Name: tdcF [C]

Synonym: Shal_0389

Alternate gene names: 167622329

Gene position: 456404-456021 (Counterclockwise)

Preceding gene: 167622330

Following gene: 167622328

Centisome position: 8.73

GC content: 45.57

Gene sequence:

>384_bases
ATGGCAGAAAAGATCATCATCGCAACCGATAAAGCGCCACAAGCAATTGGCACATACTCTCAAGCAGTAAAAGTCGGTAG
CACGGTTTATTTGTCAGGCCAGATCCCACTCAACCCTGAGACAATGCAGATAGTTAGCGATGAATTTGAAGCGCAGGTTG
TGCAAGTATTTAACAACCTAATTGCGGTTTGTGAAGCCGCTGGCGGTTCACTAAGTGATATCGTTAAGCTAAACATCTTT
ATGACCGATCTGAGTAACTTTGCCACGGTAAACGAAATCATGGGCCGCTACTTTGATCAGCCTTACCCTGCACGTGCCGC
TATCGGTGTTAAGCAACTACCGAAAGACGCACTTGTTGAAATGGATGGAGTCATGGAGATCTAA

Upstream 100 bases:

>100_bases
TCATTTAGCTAACGTGATGCGTCGAATTAGGGTACTTCCTGAAGTGTTACGTACATCTCGAAACCGTTAATTATTTCAAT
ACGCAGATAGAGGAAAGATC

Downstream 100 bases:

>100_bases
TCTTCCACTCCTCTACCAAATGGGTGCTACGGCGCCCTTTTATTGTTAAAACGTCTTACTAATTAGAAGTCCATCATGAG
TCCTGAACGTTTCGCCCGTA

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MAEKIIIATDKAPQAIGTYSQAVKVGSTVYLSGQIPLNPETMQIVSDEFEAQVVQVFNNLIAVCEAAGGSLSDIVKLNIF
MTDLSNFATVNEIMGRYFDQPYPARAAIGVKQLPKDALVEMDGVMEI

Sequences:

>Translated_127_residues
MAEKIIIATDKAPQAIGTYSQAVKVGSTVYLSGQIPLNPETMQIVSDEFEAQVVQVFNNLIAVCEAAGGSLSDIVKLNIF
MTDLSNFATVNEIMGRYFDQPYPARAAIGVKQLPKDALVEMDGVMEI
>Mature_126_residues
AEKIIIATDKAPQAIGTYSQAVKVGSTVYLSGQIPLNPETMQIVSDEFEAQVVQVFNNLIAVCEAAGGSLSDIVKLNIFM
TDLSNFATVNEIMGRYFDQPYPARAAIGVKQLPKDALVEMDGVMEI

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=42.1487603305785, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=43.5483870967742, Blast_Score=105, Evalue=8e-25,
Organism=Escherichia coli, GI87082396, Length=121, Percent_Identity=42.9752066115703, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI1787245, Length=116, Percent_Identity=33.6206896551724, Blast_Score=67, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=127, Percent_Identity=45.6692913385827, Blast_Score=111, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI25148896, Length=127, Percent_Identity=45.6692913385827, Blast_Score=111, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=127, Percent_Identity=45.6692913385827, Blast_Score=111, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=116, Percent_Identity=37.9310344827586, Blast_Score=91, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=36.2745098039216, Blast_Score=77, Evalue=6e-16,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=36.3636363636364, Blast_Score=88, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13729; Mature: 13598

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKIIIATDKAPQAIGTYSQAVKVGSTVYLSGQIPLNPETMQIVSDEFEAQVVQVFNNL
CCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
IAVCEAAGGSLSDIVKLNIFMTDLSNFATVNEIMGRYFDQPYPARAAIGVKQLPKDALVE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHCCHHHHHH
MDGVMEI
CCCCCCC
>Mature Secondary Structure 
AEKIIIATDKAPQAIGTYSQAVKVGSTVYLSGQIPLNPETMQIVSDEFEAQVVQVFNNL
CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
IAVCEAAGGSLSDIVKLNIFMTDLSNFATVNEIMGRYFDQPYPARAAIGVKQLPKDALVE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHCCHHHHHH
MDGVMEI
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]