| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622312
Identifier: 167622312
GI number: 167622312
Start: 437167
End: 439602
Strand: Reverse
Name: 167622312
Synonym: Shal_0372
Alternate gene names: NA
Gene position: 439602-437167 (Counterclockwise)
Preceding gene: 167622313
Following gene: 167622311
Centisome position: 8.41
GC content: 50.7
Gene sequence:
>2436_bases ATGAAGCCGAGCTTGAATCAATTTCTAAGCCATAAGACCGCCAAGTTAAGACTACTCATTTGGCTAACCCTAATCGCTAT TACCTTAGCGACAGGTCTTGTGTTGTGGCAAGGCGGCGCTCGGGTACAAAGCGATATTCTCGCCATGCTCCCCAAGGTGA GTGAGAGCCCGATGACCCAGCGAGCGATGGCGCAGGTCGAACAGCAGTTAGCGAACCGAATTTACTTAGGCTTCATTAGC GATAACGAGCAGTCGGCAATTGATGCGGCCAAGACCGCAATGGCTAAGCTTAAACAGCCCTCGAAAGACGGGACTCAAGT AAGTCATCGGGAAAGTGCCTTTATCGATATTAGCAGCGCGGATATGGCGCAGGCCGAAGCGCTAAACCGTTATTACTTTA ATCATAGATTTCAGCTACTCACCGATGAGCAGCAGCAACTGCTTGAGCGGGGACAGTGGCAGCAACTCACGCAAGCCACC CTCGAAAAGCTCTATAACGCCTTTAGTTATGCTAACAGCGACTTGCTGAGTCATGATCCACTGCTGCTCTACCCTGACAA TCTGATCGCACTGGCGCCATCGCAGCAGCTTAGCGTTAAGCAGGGAGTACTGCTCAAGACTATCGCCCCAAAAGTGCTAA ACCAGAGTCCCCAATTTGCCGCCATTGTAATGGCTAAAGGCCGTGATAGCGCCTTTAACCCTAACGCACAACAGCTACAA CTATCAGCACTGACAGCGGCATTCGATGCGGTAAAGCAGCAAGACAGCGATATTGAAATCATCAAGGCAGGCGCATTATT TCATGCAACGGCGGCAACCGATAACGCCAAGAAAGAGGTCTCGACTATCGGCCTTATCTCACTGCTGGGTGTTATCGCCT TAGTCTGGTTCGCGTTTCGCTCCTTTAGGCCGCTGACTATCGCCTTGGTTACCGTCAGCAGCAGCTTCCTATTTGCAGTG GTAACAACAACGGCAGTATTTGGAGAGCTACACCTACTGACGCTGGTATTTGGAACTAGCCTTATCGGGATCTCGATTGA CTACTGTTTTCATTACTACTGTGAGCGCTTAAATCACCCGAGTCATAGTAGCGACCGGGTTATTCAACAGATTTTTATCG CAATATCACTGGCGCTACTGACCAGCGTTATCGCCTACAGTGCCATAGGCCTCGCCCCCTTCCCAGGGATGCAGCAGGTC GCGATATTCTGCGCCTCAGGCTTAGTCGGTGCCTACTTAACTTTGCTACTGGCCTACCCAACTCTTGCCGCCAGACCACT GCGAGATGGGAATCGGGCCCTAGATTACGCCAGTCGCTACCAAGGTTTTATGCTTAGCCTAATGCCAACAGTGCCTCGTA AGCGCCTACTGCTTGCGGTTGGAACCTGCATGTTTATCATCATAGGTTTTACCCAGCTGACCGCTAATGACGATATCCGC CAGCTACAGCATACACCTGCAGATATTCAAGCCGAGGAAGATGAGCTGCGCACCCTGCTCAGTGGCGGCACCGACAATCA ATTTCTACTGGTAACGGCTGATAGCGAACAGCAAGTCACCGATGAGCTCGCTCAACTGGAGCCGCTCCTCAAGCAAGCGA AGCAAGATAACTTAATAGGTAACCATCTAAGCCTAAGCCGCTTTCTGCCAAGTCAGTCAGCGCAGGAGCGCCACTACCAA CTACAGGGGCAGATCTATCGAGAGTACTTAGATGAGATCCTTGCCCGCTTAGGCTTAGATCCCAGCATTAAAGGCGCGCT TGTAGAGCAATACCAAGCGGCAAAGGGGAACTTCATCACTGCCGATAACTTGTTAAATCATGCTGCGGGCGAAAGTTTTA AGCCGTTATGGTTATCGCCACAGGAGGGTGAGACAGGTTACGGCGCTATCGTGCTGCTTGGCGGGATCACACAGTTAGAG GCGCTGACTCAACACTTTGATGCCCTGCCTCATGTTGAGTTGGTTGATAAAGTCGGTGATATCTCAACAGTCATGGGCCA CTATCGGCAGATTACCTTAGGATTGTTAGCACTAGCGCTACTTATCGCCGGGATCATCTTCACCTTTAGATTTGGCGTGA GACTCGCAGCTGTGGTCGTCGCAGTTCCAGCCCTGTCGGCCCTACTGACTTTAGCCTGCTTAGGCGTCAGCAATAATCCA CTAACCCTATTTCATGCACTGGCACTGATCTTAGTCTTCGGCATCGGCATCGACTACAGCCTATTTTTTGCCGAGTCGAA GCAGCAGACTCGCGGGGTGATGATGGCAGTGTTTATGTCAGCCATGTCGACCCTATTGGCCTTTGGCTTACTAGCCTTCA GCCAAACACCAGCAATTAATGCGTTCGGCCTAACCCTATTGCTGGGTATTGGTTTTACCTTCTTGCTCTCCCCTTTTATC CAAATTTTTACAAGGAAGTCTAATGATGTCGACTGA
Upstream 100 bases:
>100_bases AAAGCCCATTAACGGCAGCGGACAAGCAGCGCTTTAGCCCCGCTTCGTTATCAGATCCATCGGTTAATAACGCCCCCAAT ATCGAGGGCAAATAGCCATA
Downstream 100 bases:
>100_bases TCAAGCTGTTCAGGATGAATTGGAACGATACCCAACCGAAGCGGTCGATATTGCCATTATTGGCGCGGGACCATCGGGTA GTATTGCCGCTAGCTTGCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 811; Mature: 811
Protein sequence:
>811_residues MKPSLNQFLSHKTAKLRLLIWLTLIAITLATGLVLWQGGARVQSDILAMLPKVSESPMTQRAMAQVEQQLANRIYLGFIS DNEQSAIDAAKTAMAKLKQPSKDGTQVSHRESAFIDISSADMAQAEALNRYYFNHRFQLLTDEQQQLLERGQWQQLTQAT LEKLYNAFSYANSDLLSHDPLLLYPDNLIALAPSQQLSVKQGVLLKTIAPKVLNQSPQFAAIVMAKGRDSAFNPNAQQLQ LSALTAAFDAVKQQDSDIEIIKAGALFHATAATDNAKKEVSTIGLISLLGVIALVWFAFRSFRPLTIALVTVSSSFLFAV VTTTAVFGELHLLTLVFGTSLIGISIDYCFHYYCERLNHPSHSSDRVIQQIFIAISLALLTSVIAYSAIGLAPFPGMQQV AIFCASGLVGAYLTLLLAYPTLAARPLRDGNRALDYASRYQGFMLSLMPTVPRKRLLLAVGTCMFIIIGFTQLTANDDIR QLQHTPADIQAEEDELRTLLSGGTDNQFLLVTADSEQQVTDELAQLEPLLKQAKQDNLIGNHLSLSRFLPSQSAQERHYQ LQGQIYREYLDEILARLGLDPSIKGALVEQYQAAKGNFITADNLLNHAAGESFKPLWLSPQEGETGYGAIVLLGGITQLE ALTQHFDALPHVELVDKVGDISTVMGHYRQITLGLLALALLIAGIIFTFRFGVRLAAVVVAVPALSALLTLACLGVSNNP LTLFHALALILVFGIGIDYSLFFAESKQQTRGVMMAVFMSAMSTLLAFGLLAFSQTPAINAFGLTLLLGIGFTFLLSPFI QIFTRKSNDVD
Sequences:
>Translated_811_residues MKPSLNQFLSHKTAKLRLLIWLTLIAITLATGLVLWQGGARVQSDILAMLPKVSESPMTQRAMAQVEQQLANRIYLGFIS DNEQSAIDAAKTAMAKLKQPSKDGTQVSHRESAFIDISSADMAQAEALNRYYFNHRFQLLTDEQQQLLERGQWQQLTQAT LEKLYNAFSYANSDLLSHDPLLLYPDNLIALAPSQQLSVKQGVLLKTIAPKVLNQSPQFAAIVMAKGRDSAFNPNAQQLQ LSALTAAFDAVKQQDSDIEIIKAGALFHATAATDNAKKEVSTIGLISLLGVIALVWFAFRSFRPLTIALVTVSSSFLFAV VTTTAVFGELHLLTLVFGTSLIGISIDYCFHYYCERLNHPSHSSDRVIQQIFIAISLALLTSVIAYSAIGLAPFPGMQQV AIFCASGLVGAYLTLLLAYPTLAARPLRDGNRALDYASRYQGFMLSLMPTVPRKRLLLAVGTCMFIIIGFTQLTANDDIR QLQHTPADIQAEEDELRTLLSGGTDNQFLLVTADSEQQVTDELAQLEPLLKQAKQDNLIGNHLSLSRFLPSQSAQERHYQ LQGQIYREYLDEILARLGLDPSIKGALVEQYQAAKGNFITADNLLNHAAGESFKPLWLSPQEGETGYGAIVLLGGITQLE ALTQHFDALPHVELVDKVGDISTVMGHYRQITLGLLALALLIAGIIFTFRFGVRLAAVVVAVPALSALLTLACLGVSNNP LTLFHALALILVFGIGIDYSLFFAESKQQTRGVMMAVFMSAMSTLLAFGLLAFSQTPAINAFGLTLLLGIGFTFLLSPFI QIFTRKSNDVD >Mature_811_residues MKPSLNQFLSHKTAKLRLLIWLTLIAITLATGLVLWQGGARVQSDILAMLPKVSESPMTQRAMAQVEQQLANRIYLGFIS DNEQSAIDAAKTAMAKLKQPSKDGTQVSHRESAFIDISSADMAQAEALNRYYFNHRFQLLTDEQQQLLERGQWQQLTQAT LEKLYNAFSYANSDLLSHDPLLLYPDNLIALAPSQQLSVKQGVLLKTIAPKVLNQSPQFAAIVMAKGRDSAFNPNAQQLQ LSALTAAFDAVKQQDSDIEIIKAGALFHATAATDNAKKEVSTIGLISLLGVIALVWFAFRSFRPLTIALVTVSSSFLFAV VTTTAVFGELHLLTLVFGTSLIGISIDYCFHYYCERLNHPSHSSDRVIQQIFIAISLALLTSVIAYSAIGLAPFPGMQQV AIFCASGLVGAYLTLLLAYPTLAARPLRDGNRALDYASRYQGFMLSLMPTVPRKRLLLAVGTCMFIIIGFTQLTANDDIR QLQHTPADIQAEEDELRTLLSGGTDNQFLLVTADSEQQVTDELAQLEPLLKQAKQDNLIGNHLSLSRFLPSQSAQERHYQ LQGQIYREYLDEILARLGLDPSIKGALVEQYQAAKGNFITADNLLNHAAGESFKPLWLSPQEGETGYGAIVLLGGITQLE ALTQHFDALPHVELVDKVGDISTVMGHYRQITLGLLALALLIAGIIFTFRFGVRLAAVVVAVPALSALLTLACLGVSNNP LTLFHALALILVFGIGIDYSLFFAESKQQTRGVMMAVFMSAMSTLLAFGLLAFSQTPAINAFGLTLLLGIGFTFLLSPFI QIFTRKSNDVD
Specific function: Unknown
COG id: COG4258
COG function: function code R; Predicted exporter
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88702; Mature: 88702
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPSLNQFLSHKTAKLRLLIWLTLIAITLATGLVLWQGGARVQSDILAMLPKVSESPMTQ CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHH RAMAQVEQQLANRIYLGFISDNEQSAIDAAKTAMAKLKQPSKDGTQVSHRESAFIDISSA HHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCH DMAQAEALNRYYFNHRFQLLTDEQQQLLERGQWQQLTQATLEKLYNAFSYANSDLLSHDP HHHHHHHHHHHHHHCHHEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC LLLYPDNLIALAPSQQLSVKQGVLLKTIAPKVLNQSPQFAAIVMAKGRDSAFNPNAQQLQ EEEECCCEEEECCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHH LSALTAAFDAVKQQDSDIEIIKAGALFHATAATDNAKKEVSTIGLISLLGVIALVWFAFR HHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SFRPLTIALVTVSSSFLFAVVTTTAVFGELHLLTLVFGTSLIGISIDYCFHYYCERLNHP CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SHSSDRVIQQIFIAISLALLTSVIAYSAIGLAPFPGMQQVAIFCASGLVGAYLTLLLAYP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TLAARPLRDGNRALDYASRYQGFMLSLMPTVPRKRLLLAVGTCMFIIIGFTQLTANDDIR HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH QLQHTPADIQAEEDELRTLLSGGTDNQFLLVTADSEQQVTDELAQLEPLLKQAKQDNLIG HHHCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC NHLSLSRFLPSQSAQERHYQLQGQIYREYLDEILARLGLDPSIKGALVEQYQAAKGNFIT CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEE ADNLLNHAAGESFKPLWLSPQEGETGYGAIVLLGGITQLEALTQHFDALPHVELVDKVGD HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHH ISTVMGHYRQITLGLLALALLIAGIIFTFRFGVRLAAVVVAVPALSALLTLACLGVSNNP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LTLFHALALILVFGIGIDYSLFFAESKQQTRGVMMAVFMSAMSTLLAFGLLAFSQTPAIN HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH AFGLTLLLGIGFTFLLSPFIQIFTRKSNDVD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKPSLNQFLSHKTAKLRLLIWLTLIAITLATGLVLWQGGARVQSDILAMLPKVSESPMTQ CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHH RAMAQVEQQLANRIYLGFISDNEQSAIDAAKTAMAKLKQPSKDGTQVSHRESAFIDISSA HHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCH DMAQAEALNRYYFNHRFQLLTDEQQQLLERGQWQQLTQATLEKLYNAFSYANSDLLSHDP HHHHHHHHHHHHHHCHHEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC LLLYPDNLIALAPSQQLSVKQGVLLKTIAPKVLNQSPQFAAIVMAKGRDSAFNPNAQQLQ EEEECCCEEEECCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHH LSALTAAFDAVKQQDSDIEIIKAGALFHATAATDNAKKEVSTIGLISLLGVIALVWFAFR HHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SFRPLTIALVTVSSSFLFAVVTTTAVFGELHLLTLVFGTSLIGISIDYCFHYYCERLNHP CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SHSSDRVIQQIFIAISLALLTSVIAYSAIGLAPFPGMQQVAIFCASGLVGAYLTLLLAYP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TLAARPLRDGNRALDYASRYQGFMLSLMPTVPRKRLLLAVGTCMFIIIGFTQLTANDDIR HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH QLQHTPADIQAEEDELRTLLSGGTDNQFLLVTADSEQQVTDELAQLEPLLKQAKQDNLIG HHHCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC NHLSLSRFLPSQSAQERHYQLQGQIYREYLDEILARLGLDPSIKGALVEQYQAAKGNFIT CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEE ADNLLNHAAGESFKPLWLSPQEGETGYGAIVLLGGITQLEALTQHFDALPHVELVDKVGD HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHH ISTVMGHYRQITLGLLALALLIAGIIFTFRFGVRLAAVVVAVPALSALLTLACLGVSNNP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LTLFHALALILVFGIGIDYSLFFAESKQQTRGVMMAVFMSAMSTLLAFGLLAFSQTPAIN HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH AFGLTLLLGIGFTFLLSPFIQIFTRKSNDVD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA