| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622311
Identifier: 167622311
GI number: 167622311
Start: 435873
End: 437180
Strand: Reverse
Name: 167622311
Synonym: Shal_0371
Alternate gene names: NA
Gene position: 437180-435873 (Counterclockwise)
Preceding gene: 167622312
Following gene: 167622310
Centisome position: 8.36
GC content: 48.55
Gene sequence:
>1308_bases ATGATGTCGACTGATCAAGCTGTTCAGGATGAATTGGAACGATACCCAACCGAAGCGGTCGATATTGCCATTATTGGCGC GGGACCATCGGGTAGTATTGCCGCTAGCTTGCTACACGCTCAAGGTAAGAAAGTATTAGTGTTAGAGAAACAGCATTTTC CGCGCTTCTCTATCGGTGAGAGCCTGCTGCCTTGCTGCATGCAAGTTATCGATGAAGCCAATATGCTTGAAGCGGTCAAT CAAGCAGGATTCCAGTTTAAAAACGGCGCCGCTTTTCGCCACCAAGATAAATACACCAGCTTCGATTTTACCGATAAGTT CACCCAAGGCCCCGGCACGACCTTTCAGGTAGAGCGCGCTAATTTCGATAAACTGCTAGCCGATGAAGCTGTCAGTCAAG GTGTGGAGATCCGTTACGGTCACACGGTCGAGTCGATAGATTTAAGCGCCGAGCCAAGCCTTAGTGTGAGCAACGGTAAG GGCCAGACCCAAACCATCAATGCCAAGTTTGTGCTCGATGCCAGTGGCTTTGGCCGTGTGCTACCAAGACTGTTGGACTT AGAAAAGCCGTCTACCTTACCGACTCGTAGCGCCGTGTTTAACCATATTCACGACAACATCTCAGACCCTAACTTTGACC GCAATAAGATTTTGATCAGTGTCCATCCCGATAACCAAGATATCTGGTATTGGCTCATTCCTTTCAGCGATGGCCGCTGC TCGGTCGGCGTTGTGGGAGAGCCTGAACAACTCAGCTCTCTAAGCGGTTACGCAAGTAATGGCTTTAGCGATGAGATCGG CAATAGTGACTTAGATAAAATTCTTAAGACCATGATTAACCAAGAGCCGGGATTAAGAGCGTTACTCGCAGATGCAGAGC TGATTAATGAATCGGGCCTACTCAAAGGCTACTCGGCCAATGTGAAGACACTAGCAACCGATAAGTTTGCCCTGCTGGGT AATGCTGGCGAGTTTCTCGATCCGGTATTTTCATCGGGGGTAACCATAGCGATGCAGTCAGCCTCCATGGCGGCAAAAAC AGTAATAAGACAGCTCGATGGAGAGCGGGTCGATTGGCAGCAGGACTATGCAGAGCCATTGATGAAAGGGGTCGATACTT TCAGAACCTATGTCGAAGCTTGGTACGATTACAGCTTCCAAGAAGCGATCTTCTTCGATAAGCCCGATCCGAAAATCAAG CAGATGATCTGCTCAATTCTTGCTGGATATGCTTGGGATGACAACAATCCTTTCGTTAGCGAATCGAAGCGCCGACTCAA TATGGTTGTAGAGCTATGTCGAAGTTAA
Upstream 100 bases:
>100_bases CAAACACCAGCAATTAATGCGTTCGGCCTAACCCTATTGCTGGGTATTGGTTTTACCTTCTTGCTCTCCCCTTTTATCCA AATTTTTACAAGGAAGTCTA
Downstream 100 bases:
>100_bases GTAGAAGATTAGCCTTTGTGGGCCTTTGCCTATTAATCACAGCCTGTAGCCAGACCCTGCAGCGTCAAACCTGTGTCGAA TTGGCAGCAGATGTGAGCTA
Product: tryptophan halogenase
Products: NA
Alternate protein names: Halogenase; FAD Dependent Oxidoreductase; Oxidoreductase Protein; Oxidoreductase; Dehydrogenase; FADH2 Dependent Halogenase; Pyridine Nucleotide-Disulfide Oxidoreductase; Alkylhalidase PltA; Dehyrogenase; Oxidoreductase Transmembrane Protein; LOW QUALITY PROTEIN Dehydrogenase; Monooxygenase; Dehydrogenases; Halogenase Protein; Flavoprotein/Dehydrogenase; Dehydrogenase/Oxidoreductase; Halogenase A; FAD Oxidoreductase; Hydroxylase; Alkylhalidase CmlS; Alkylhalidase; LOW QUALITY PROTEIN Oxidoreductase
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MMSTDQAVQDELERYPTEAVDIAIIGAGPSGSIAASLLHAQGKKVLVLEKQHFPRFSIGESLLPCCMQVIDEANMLEAVN QAGFQFKNGAAFRHQDKYTSFDFTDKFTQGPGTTFQVERANFDKLLADEAVSQGVEIRYGHTVESIDLSAEPSLSVSNGK GQTQTINAKFVLDASGFGRVLPRLLDLEKPSTLPTRSAVFNHIHDNISDPNFDRNKILISVHPDNQDIWYWLIPFSDGRC SVGVVGEPEQLSSLSGYASNGFSDEIGNSDLDKILKTMINQEPGLRALLADAELINESGLLKGYSANVKTLATDKFALLG NAGEFLDPVFSSGVTIAMQSASMAAKTVIRQLDGERVDWQQDYAEPLMKGVDTFRTYVEAWYDYSFQEAIFFDKPDPKIK QMICSILAGYAWDDNNPFVSESKRRLNMVVELCRS
Sequences:
>Translated_435_residues MMSTDQAVQDELERYPTEAVDIAIIGAGPSGSIAASLLHAQGKKVLVLEKQHFPRFSIGESLLPCCMQVIDEANMLEAVN QAGFQFKNGAAFRHQDKYTSFDFTDKFTQGPGTTFQVERANFDKLLADEAVSQGVEIRYGHTVESIDLSAEPSLSVSNGK GQTQTINAKFVLDASGFGRVLPRLLDLEKPSTLPTRSAVFNHIHDNISDPNFDRNKILISVHPDNQDIWYWLIPFSDGRC SVGVVGEPEQLSSLSGYASNGFSDEIGNSDLDKILKTMINQEPGLRALLADAELINESGLLKGYSANVKTLATDKFALLG NAGEFLDPVFSSGVTIAMQSASMAAKTVIRQLDGERVDWQQDYAEPLMKGVDTFRTYVEAWYDYSFQEAIFFDKPDPKIK QMICSILAGYAWDDNNPFVSESKRRLNMVVELCRS >Mature_435_residues MMSTDQAVQDELERYPTEAVDIAIIGAGPSGSIAASLLHAQGKKVLVLEKQHFPRFSIGESLLPCCMQVIDEANMLEAVN QAGFQFKNGAAFRHQDKYTSFDFTDKFTQGPGTTFQVERANFDKLLADEAVSQGVEIRYGHTVESIDLSAEPSLSVSNGK GQTQTINAKFVLDASGFGRVLPRLLDLEKPSTLPTRSAVFNHIHDNISDPNFDRNKILISVHPDNQDIWYWLIPFSDGRC SVGVVGEPEQLSSLSGYASNGFSDEIGNSDLDKILKTMINQEPGLRALLADAELINESGLLKGYSANVKTLATDKFALLG NAGEFLDPVFSSGVTIAMQSASMAAKTVIRQLDGERVDWQQDYAEPLMKGVDTFRTYVEAWYDYSFQEAIFFDKPDPKIK QMICSILAGYAWDDNNPFVSESKRRLNMVVELCRS
Specific function: Unknown
COG id: COG0644
COG function: function code C; Dehydrogenases (flavoproteins)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48072; Mature: 48072
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSTDQAVQDELERYPTEAVDIAIIGAGPSGSIAASLLHAQGKKVLVLEKQHFPRFSIGE CCCCCHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCH SLLPCCMQVIDEANMLEAVNQAGFQFKNGAAFRHQDKYTSFDFTDKFTQGPGTTFQVERA HHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECC NFDKLLADEAVSQGVEIRYGHTVESIDLSAEPSLSVSNGKGQTQTINAKFVLDASGFGRV CHHHHHHHHHHHCCCEEEECCEEEEECCCCCCCEEECCCCCCEEEEEEEEEEECCCHHHH LPRLLDLEKPSTLPTRSAVFNHIHDNISDPNFDRNKILISVHPDNQDIWYWLIPFSDGRC HHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCE SVGVVGEPEQLSSLSGYASNGFSDEIGNSDLDKILKTMINQEPGLRALLADAELINESGL EEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC LKGYSANVKTLATDKFALLGNAGEFLDPVFSSGVTIAMQSASMAAKTVIRQLDGERVDWQ CCCCCCCCEEEECCCEEEECCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCHH QDYAEPLMKGVDTFRTYVEAWYDYSFQEAIFFDKPDPKIKQMICSILAGYAWDDNNPFVS HHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHH ESKRRLNMVVELCRS HHHHHHHHHHHHHCC >Mature Secondary Structure MMSTDQAVQDELERYPTEAVDIAIIGAGPSGSIAASLLHAQGKKVLVLEKQHFPRFSIGE CCCCCHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCH SLLPCCMQVIDEANMLEAVNQAGFQFKNGAAFRHQDKYTSFDFTDKFTQGPGTTFQVERA HHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECC NFDKLLADEAVSQGVEIRYGHTVESIDLSAEPSLSVSNGKGQTQTINAKFVLDASGFGRV CHHHHHHHHHHHCCCEEEECCEEEEECCCCCCCEEECCCCCCEEEEEEEEEEECCCHHHH LPRLLDLEKPSTLPTRSAVFNHIHDNISDPNFDRNKILISVHPDNQDIWYWLIPFSDGRC HHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCE SVGVVGEPEQLSSLSGYASNGFSDEIGNSDLDKILKTMINQEPGLRALLADAELINESGL EEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC LKGYSANVKTLATDKFALLGNAGEFLDPVFSSGVTIAMQSASMAAKTVIRQLDGERVDWQ CCCCCCCCEEEECCCEEEECCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCHH QDYAEPLMKGVDTFRTYVEAWYDYSFQEAIFFDKPDPKIKQMICSILAGYAWDDNNPFVS HHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHH ESKRRLNMVVELCRS HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA