Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167622041

Identifier: 167622041

GI number: 167622041

Start: 112377

End: 112844

Strand: Direct

Name: 167622041

Synonym: Shal_0100

Alternate gene names: NA

Gene position: 112377-112844 (Clockwise)

Preceding gene: 167622038

Following gene: 167622042

Centisome position: 2.15

GC content: 48.29

Gene sequence:

>468_bases
ATGCAACATACCGAAAGCCAATGGCCAATGTACGTTTCCCTTAAGAAGATAGAGAAACAAGTCGGAAGATGGACCTCAGT
ACAGTGGGAAGTCGACCAGATGCTTCCCGCCACCCACGCCGCACCTGAGGGTGCCTACTTAATTTTGCTAGAACTCCATA
AAGATGAACGCGGAAGCTACCGTATCAATATCGATATGGATAATGCCATGCTTTATATCGTCTGTGACGAAACAGAAGAG
GGTGAGTGGAAACCAGTCGCTATTTCTGCTGATCAGAATGTCGCAGCGGGTTGTCTAGAAGCCGACACTCCCGTACTAAA
CATTCCTATGCCGAAAGCCATAGCCTGCTGGATCGAAGCCTTTATTACTCGTCATGGTGAAGTCGAAATCTGCGCTCATC
GTCGTAAGCATGTTAACCGTCGCAAGAATGAAGGCCCTAGTACCGATCATACGGCGGATAGAGCATGA

Upstream 100 bases:

>100_bases
CAATTGATATTGTATGGCACGCATATTGCTTTAGCTTTAGGGAGTATTTATTTAGTTGGCTTGCCATATTGGCAGCCACC
TCAGGCAAGACGGAGACTGA

Downstream 100 bases:

>100_bases
GCGGATTTTTATCTCGCTGGAATCTGCGAAAGCAGCAAGTAGAGGCTGAAGGCGAAGCAGAAGTTGCCGCGGCTGAAGCT
GCTGCACAACAACTCGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MQHTESQWPMYVSLKKIEKQVGRWTSVQWEVDQMLPATHAAPEGAYLILLELHKDERGSYRINIDMDNAMLYIVCDETEE
GEWKPVAISADQNVAAGCLEADTPVLNIPMPKAIACWIEAFITRHGEVEICAHRRKHVNRRKNEGPSTDHTADRA

Sequences:

>Translated_155_residues
MQHTESQWPMYVSLKKIEKQVGRWTSVQWEVDQMLPATHAAPEGAYLILLELHKDERGSYRINIDMDNAMLYIVCDETEE
GEWKPVAISADQNVAAGCLEADTPVLNIPMPKAIACWIEAFITRHGEVEICAHRRKHVNRRKNEGPSTDHTADRA
>Mature_155_residues
MQHTESQWPMYVSLKKIEKQVGRWTSVQWEVDQMLPATHAAPEGAYLILLELHKDERGSYRINIDMDNAMLYIVCDETEE
GEWKPVAISADQNVAAGCLEADTPVLNIPMPKAIACWIEAFITRHGEVEICAHRRKHVNRRKNEGPSTDHTADRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17665; Mature: 17665

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHTESQWPMYVSLKKIEKQVGRWTSVQWEVDQMLPATHAAPEGAYLILLELHKDERGSY
CCCCCCCCCEEEEHHHHHHHHCCCCCEEEEHHHHCCCCCCCCCCEEEEEEEECCCCCCCE
RINIDMDNAMLYIVCDETEEGEWKPVAISADQNVAAGCLEADTPVLNIPMPKAIACWIEA
EEEEEECCEEEEEEECCCCCCCEEEEEEECCCCCCCEEECCCCCEEECCCCHHHHHHHHH
FITRHGEVEICAHRRKHVNRRKNEGPSTDHTADRA
HHHCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQHTESQWPMYVSLKKIEKQVGRWTSVQWEVDQMLPATHAAPEGAYLILLELHKDERGSY
CCCCCCCCCEEEEHHHHHHHHCCCCCEEEEHHHHCCCCCCCCCCEEEEEEEECCCCCCCE
RINIDMDNAMLYIVCDETEEGEWKPVAISADQNVAAGCLEADTPVLNIPMPKAIACWIEA
EEEEEECCEEEEEEECCCCCCCEEEEEEECCCCCCCEEECCCCCEEECCCCHHHHHHHHH
FITRHGEVEICAHRRKHVNRRKNEGPSTDHTADRA
HHHCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA