| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622042
Identifier: 167622042
GI number: 167622042
Start: 112841
End: 113503
Strand: Direct
Name: 167622042
Synonym: Shal_0101
Alternate gene names: NA
Gene position: 112841-113503 (Clockwise)
Preceding gene: 167622041
Following gene: 167622043
Centisome position: 2.16
GC content: 48.72
Gene sequence:
>663_bases ATGAGCGGATTTTTATCTCGCTGGAATCTGCGAAAGCAGCAAGTAGAGGCTGAAGGCGAAGCAGAAGTTGCCGCGGCTGA AGCTGCTGCACAACAACTCGCCGAAGAGCAGGCGCTTACAGCACAAAAGCAAGCTGAAGCGGAGCAGTCTACAGCGCAGG ATTCAACTCAAACGATTGAAAATGCACAAGTAGAAGCGGATGCCGATAGAATCTTAACTGCTGAAGATCTACCTGATCCT GAGAAGATTGAAGTCGGTGGTAGTTTTGCCAGCTTTATGGGCGCTAACGTTGACCCAGCAGCTAAGTCCGCCGCGTTAAA GGCGCTCTGGAAACAGCCTCACTACAGTGAGATTGATGGCTTGCTTGAATATGCGCTCGATTACAGCAATCAGCCTAAAT TGTCGGCCGAAGTCTCAGCGGAGTTAGCTAAAAAAGTATTCCGATACATGGTCAAAGATGAAGACGATGAAGAGGGAACG CAAGAGGGAACGCAAGAGGGAGTTGAGGCTGCATCAGATGAGATGATTGCCGCTGAGAACTCCGATCAAAATGAACGCCT TAATGATGCAGATTCTGTGTCGGACATTTTGGACGGTCACCAAGACAACGTGACCCAAAATGAACCAGAAAGCAGCGACG CTTCGACGAGTAAAGTTGTTTAA
Upstream 100 bases:
>100_bases TTACTCGTCATGGTGAAGTCGAAATCTGCGCTCATCGTCGTAAGCATGTTAACCGTCGCAAGAATGAAGGCCCTAGTACC GATCATACGGCGGATAGAGC
Downstream 100 bases:
>100_bases CGTTACTATAGAGTGTTTTAAATTCCACAAATTTGGTATGTGAATTGCTGTAATAGAGTGTAATTAATAGCTGGCGCTAA TAAAAAGAGCGAAATAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MSGFLSRWNLRKQQVEAEGEAEVAAAEAAAQQLAEEQALTAQKQAEAEQSTAQDSTQTIENAQVEADADRILTAEDLPDP EKIEVGGSFASFMGANVDPAAKSAALKALWKQPHYSEIDGLLEYALDYSNQPKLSAEVSAELAKKVFRYMVKDEDDEEGT QEGTQEGVEAASDEMIAAENSDQNERLNDADSVSDILDGHQDNVTQNEPESSDASTSKVV
Sequences:
>Translated_220_residues MSGFLSRWNLRKQQVEAEGEAEVAAAEAAAQQLAEEQALTAQKQAEAEQSTAQDSTQTIENAQVEADADRILTAEDLPDP EKIEVGGSFASFMGANVDPAAKSAALKALWKQPHYSEIDGLLEYALDYSNQPKLSAEVSAELAKKVFRYMVKDEDDEEGT QEGTQEGVEAASDEMIAAENSDQNERLNDADSVSDILDGHQDNVTQNEPESSDASTSKVV >Mature_219_residues SGFLSRWNLRKQQVEAEGEAEVAAAEAAAQQLAEEQALTAQKQAEAEQSTAQDSTQTIENAQVEADADRILTAEDLPDPE KIEVGGSFASFMGANVDPAAKSAALKALWKQPHYSEIDGLLEYALDYSNQPKLSAEVSAELAKKVFRYMVKDEDDEEGTQ EGTQEGVEAASDEMIAAENSDQNERLNDADSVSDILDGHQDNVTQNEPESSDASTSKVV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23757; Mature: 23625
Theoretical pI: Translated: 3.81; Mature: 3.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGFLSRWNLRKQQVEAEGEAEVAAAEAAAQQLAEEQALTAQKQAEAEQSTAQDSTQTIE CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NAQVEADADRILTAEDLPDPEKIEVGGSFASFMGANVDPAAKSAALKALWKQPHYSEIDG HHHHHCCHHHEEECCCCCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHH LLEYALDYSNQPKLSAEVSAELAKKVFRYMVKDEDDEEGTQEGTQEGVEAASDEMIAAEN HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEECCC SDQNERLNDADSVSDILDGHQDNVTQNEPESSDASTSKVV CCCHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SGFLSRWNLRKQQVEAEGEAEVAAAEAAAQQLAEEQALTAQKQAEAEQSTAQDSTQTIE CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NAQVEADADRILTAEDLPDPEKIEVGGSFASFMGANVDPAAKSAALKALWKQPHYSEIDG HHHHHCCHHHEEECCCCCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHH LLEYALDYSNQPKLSAEVSAELAKKVFRYMVKDEDDEEGTQEGTQEGVEAASDEMIAAEN HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEECCC SDQNERLNDADSVSDILDGHQDNVTQNEPESSDASTSKVV CCCHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA