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The map label for this gene is nocR [H]

Identifier: 167622017

GI number: 167622017

Start: 86747

End: 87673

Strand: Direct

Name: nocR [H]

Synonym: Shal_0076

Alternate gene names: 167622017

Gene position: 86747-87673 (Clockwise)

Preceding gene: 167622015

Following gene: 167622026

Centisome position: 1.66

GC content: 46.39

Gene sequence:

>927_bases
ATGCTTGCGGATTCGAAAATTAAGATTCGTCAAATTGAAGCGTTTCGCTGCTTTATGTTGTCAGGCACGGTAACGGGAGC
TGCCGAACTCCTGTATATCTCTCAACCTGCAGTGAGTCGATTGTTGTCCGAGCTTGAGTATCGTGTCGGTTTTCCACTTT
TTATCCGTACACACAATAAGTTAGAGGCGACACCTGAGGCCAAGCTGTTCTATAAGGATGTTAACCGAGTATTTGTGGGC
ATGAACAGTTTAACCTCTTCGGCTGATGCCATCGCCCGTAATAATCAGGGGCGATTGCGTATCGGAGTCATGCCTATCTG
CTCTAACAGCTTTATGCCCGATGTGATTGCGGCGTTTTTAAGCTTGCACCCTAATGTATCGATTGAGCTGGAGTCGGCAT
CGAGAATTCAGTTATTGGAGATGGTACGAAGTCATAGAATCGATATCGCGATAACGACTAACGTTGAAGCGGATGAAGAT
GAGTTCAGCTGTCGCTTTCTGCGCAGACACCGAGCGGTGGTCTTGCTTCATGAGGGGCACCCATTAGCACAAAAAAGCTC
ACTCTCACCGATCGATCTGAAACATGAACGCTTTATGACCTTGGCTTATGGCAGCCCGTTTCGAACCCGAGTCGAAGATG
CATTTCTTAAGCAGAGTGTTAAGCGTAATATTATCCTCGAAGCGAGAGAGCAAAGTACGCTATTTCAGTTGGTAAGAAAG
GGAGTTGGCATCGCAATTTTAGATCCTTTCGTACTGCACTCAGGAGCTGATGGCATTGTGAGTCGTCCATTTGAGCCTGT
AACTGAGTGGGAATACCACGTGGTTCAGGCAAAAGGCATCCAGACTCCTAGAATGGTGAATGCTTTTCTAGACATCTTAT
TTGAGTATTTTGAAAGCCCCTCGCTGAATAAAGAGCCTGACCGTTAA

Upstream 100 bases:

>100_bases
AGCTATAGAAGTTACTGATTTTGGGAGCAAATGCTCGGTAGTCAAATGAGTTTTTCGATACTATTTAGCAAAGGCTATAT
CTAAATTAGGTGAAGTTATA

Downstream 100 bases:

>100_bases
TTTTAAAATGGAAAAACAATTAAAAAAATACCGCAGCATGCTGCGGTATTTTTTGGGGGATTCGCGGGTCATTGAATTCT
GATTAGCTTCTTACTGCAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MLADSKIKIRQIEAFRCFMLSGTVTGAAELLYISQPAVSRLLSELEYRVGFPLFIRTHNKLEATPEAKLFYKDVNRVFVG
MNSLTSSADAIARNNQGRLRIGVMPICSNSFMPDVIAAFLSLHPNVSIELESASRIQLLEMVRSHRIDIAITTNVEADED
EFSCRFLRRHRAVVLLHEGHPLAQKSSLSPIDLKHERFMTLAYGSPFRTRVEDAFLKQSVKRNIILEAREQSTLFQLVRK
GVGIAILDPFVLHSGADGIVSRPFEPVTEWEYHVVQAKGIQTPRMVNAFLDILFEYFESPSLNKEPDR

Sequences:

>Translated_308_residues
MLADSKIKIRQIEAFRCFMLSGTVTGAAELLYISQPAVSRLLSELEYRVGFPLFIRTHNKLEATPEAKLFYKDVNRVFVG
MNSLTSSADAIARNNQGRLRIGVMPICSNSFMPDVIAAFLSLHPNVSIELESASRIQLLEMVRSHRIDIAITTNVEADED
EFSCRFLRRHRAVVLLHEGHPLAQKSSLSPIDLKHERFMTLAYGSPFRTRVEDAFLKQSVKRNIILEAREQSTLFQLVRK
GVGIAILDPFVLHSGADGIVSRPFEPVTEWEYHVVQAKGIQTPRMVNAFLDILFEYFESPSLNKEPDR
>Mature_308_residues
MLADSKIKIRQIEAFRCFMLSGTVTGAAELLYISQPAVSRLLSELEYRVGFPLFIRTHNKLEATPEAKLFYKDVNRVFVG
MNSLTSSADAIARNNQGRLRIGVMPICSNSFMPDVIAAFLSLHPNVSIELESASRIQLLEMVRSHRIDIAITTNVEADED
EFSCRFLRRHRAVVLLHEGHPLAQKSSLSPIDLKHERFMTLAYGSPFRTRVEDAFLKQSVKRNIILEAREQSTLFQLVRK
GVGIAILDPFVLHSGADGIVSRPFEPVTEWEYHVVQAKGIQTPRMVNAFLDILFEYFESPSLNKEPDR

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=286, Percent_Identity=30.0699300699301, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787530, Length=236, Percent_Identity=25.8474576271186, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788296, Length=227, Percent_Identity=26.431718061674, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=258, Percent_Identity=24.4186046511628, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787601, Length=210, Percent_Identity=27.1428571428571, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI2367136, Length=266, Percent_Identity=24.812030075188, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788887, Length=261, Percent_Identity=24.904214559387, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788748, Length=301, Percent_Identity=22.2591362126246, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI145693105, Length=283, Percent_Identity=24.3816254416961, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790262, Length=249, Percent_Identity=23.6947791164659, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788481, Length=276, Percent_Identity=26.0869565217391, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790399, Length=239, Percent_Identity=25.1046025104602, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081904, Length=150, Percent_Identity=28.6666666666667, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693193, Length=129, Percent_Identity=28.6821705426357, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34904; Mature: 34904

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLADSKIKIRQIEAFRCFMLSGTVTGAAELLYISQPAVSRLLSELEYRVGFPLFIRTHNK
CCCCCCEEEEEEHEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
LEATPEAKLFYKDVNRVFVGMNSLTSSADAIARNNQGRLRIGVMPICSNSFMPDVIAAFL
CCCCCCHHHHHHHHHHHHEEHHHHCCHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHH
SLHPNVSIELESASRIQLLEMVRSHRIDIAITTNVEADEDEFSCRFLRRHRAVVLLHEGH
HCCCCEEEEECCCHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCC
PLAQKSSLSPIDLKHERFMTLAYGSPFRTRVEDAFLKQSVKRNIILEAREQSTLFQLVRK
CCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHC
GVGIAILDPFVLHSGADGIVSRPFEPVTEWEYHVVQAKGIQTPRMVNAFLDILFEYFESP
CCCEEEECHHHHCCCCCCHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
SLNKEPDR
CCCCCCCC
>Mature Secondary Structure
MLADSKIKIRQIEAFRCFMLSGTVTGAAELLYISQPAVSRLLSELEYRVGFPLFIRTHNK
CCCCCCEEEEEEHEEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
LEATPEAKLFYKDVNRVFVGMNSLTSSADAIARNNQGRLRIGVMPICSNSFMPDVIAAFL
CCCCCCHHHHHHHHHHHHEEHHHHCCHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHH
SLHPNVSIELESASRIQLLEMVRSHRIDIAITTNVEADEDEFSCRFLRRHRAVVLLHEGH
HCCCCEEEEECCCHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCC
PLAQKSSLSPIDLKHERFMTLAYGSPFRTRVEDAFLKQSVKRNIILEAREQSTLFQLVRK
CCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHC
GVGIAILDPFVLHSGADGIVSRPFEPVTEWEYHVVQAKGIQTPRMVNAFLDILFEYFESP
CCCEEEECHHHHCCCCCCHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
SLNKEPDR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]