Click here to switch to the map view.

The map label for this gene is yrdD [H]

Identifier: 167621973

GI number: 167621973

Start: 37503

End: 38066

Strand: Direct

Name: yrdD [H]

Synonym: Shal_0032

Alternate gene names: 167621973

Gene position: 37503-38066 (Clockwise)

Preceding gene: 167621971

Following gene: 167621974

Centisome position: 0.72

GC content: 45.57

Gene sequence:

>564_bases
ATGGCTAAAATCGATCAGCAACTGTTTACTACGCACGAGCACGCTCTTGAGAAAGAGTTTGAGCTGTGCCCTAAGTGTGG
CTGTGAGTTGTCGGTAAAGCACAGTAAGCACGGTGGTTTTATTGGATGTAATAACTATCCAAGCTGCGACTACACAAGGC
CGTTGGTGCAGCATGAGTCAATCGAAACACAGGTGATTCAAGGCTCGGTTTGTCCTGACTGTGGCAATGAGCTGGCTGTG
AAGTCAGGTCGCTTTGGTATTTTTATTGGCTGTACTAACTATCCAGCCTGCAGTCATATCGAAAAACATGATAAAGCTGA
TGCTGAAGATGAGATAGCCTGTCCTAAGTGTAAAAAGGGACATATCGAACACAGAACCAGTCGCTTTGGTAAATCCTTTT
ACGCCTGCAGTGCTTATCCAAAGTGTAAGTTTTTAGTCAACTATCCTCCTGTCGCAGAAACCTGCCCTGATTGTGGCTGT
GGTATTTTAGTTGAACGCAAAGGGGCGGCAGGTATGCGCCTAGAGTGCCCTGAAAAGACTTGTAAATATAAGCGCCCTGT
TTAA

Upstream 100 bases:

>100_bases
ATACAATATATCATTGCTTTTTACGAAATTCTAACACTGGAATATAAAACTTAATCGATTCCTTGGTAGAATAGCGCTAT
ATAGATGAATTGAGATAACC

Downstream 100 bases:

>100_bases
ATAGTCATATTAACTTTCACTAATGCCGCTTTTGCATAATCATAGCGACATACATCGCGCGGATTAATATAAGGTGAAGA
GAGACAAATGTTAGAAGTAT

Product: DNA topoisomerase type IA Zn finger domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MAKIDQQLFTTHEHALEKEFELCPKCGCELSVKHSKHGGFIGCNNYPSCDYTRPLVQHESIETQVIQGSVCPDCGNELAV
KSGRFGIFIGCTNYPACSHIEKHDKADAEDEIACPKCKKGHIEHRTSRFGKSFYACSAYPKCKFLVNYPPVAETCPDCGC
GILVERKGAAGMRLECPEKTCKYKRPV

Sequences:

>Translated_187_residues
MAKIDQQLFTTHEHALEKEFELCPKCGCELSVKHSKHGGFIGCNNYPSCDYTRPLVQHESIETQVIQGSVCPDCGNELAV
KSGRFGIFIGCTNYPACSHIEKHDKADAEDEIACPKCKKGHIEHRTSRFGKSFYACSAYPKCKFLVNYPPVAETCPDCGC
GILVERKGAAGMRLECPEKTCKYKRPV
>Mature_186_residues
AKIDQQLFTTHEHALEKEFELCPKCGCELSVKHSKHGGFIGCNNYPSCDYTRPLVQHESIETQVIQGSVCPDCGNELAVK
SGRFGIFIGCTNYPACSHIEKHDKADAEDEIACPKCKKGHIEHRTSRFGKSFYACSAYPKCKFLVNYPPVAETCPDCGCG
ILVERKGAAGMRLECPEKTCKYKRPV

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=182, Percent_Identity=46.7032967032967, Blast_Score=172, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 20770; Mature: 20639

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
10.7 %Cys+Met (Translated Protein)
9.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
10.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIDQQLFTTHEHALEKEFELCPKCGCELSVKHSKHGGFIGCNNYPSCDYTRPLVQHES
CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCHHHHCC
IETQVIQGSVCPDCGNELAVKSGRFGIFIGCTNYPACSHIEKHDKADAEDEIACPKCKKG
CCEEEEECCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
HIEHRTSRFGKSFYACSAYPKCKFLVNYPPVAETCPDCGCGILVERKGAAGMRLECPEKT
CHHHHHHHHCCCEEEECCCCCEEEEECCCCHHHCCCCCCCCEEEECCCCCCCEEECCHHH
CKYKRPV
CCCCCCC
>Mature Secondary Structure 
AKIDQQLFTTHEHALEKEFELCPKCGCELSVKHSKHGGFIGCNNYPSCDYTRPLVQHES
CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCHHHHCC
IETQVIQGSVCPDCGNELAVKSGRFGIFIGCTNYPACSHIEKHDKADAEDEIACPKCKKG
CCEEEEECCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
HIEHRTSRFGKSFYACSAYPKCKFLVNYPPVAETCPDCGCGILVERKGAAGMRLECPEKT
CHHHHHHHHCCCEEEECCCCCEEEEECCCCHHHCCCCCCCCEEEECCCCCCCEEECCHHH
CKYKRPV
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]