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The map label for this gene is rimN

Identifier: 167621974

GI number: 167621974

Start: 38154

End: 38717

Strand: Direct

Name: rimN

Synonym: Shal_0033

Alternate gene names: 167621974

Gene position: 38154-38717 (Clockwise)

Preceding gene: 167621973

Following gene: 167621975

Centisome position: 0.73

GC content: 46.28

Gene sequence:

>564_bases
ATGTTAGAAGTATTGCCTGCAGACGTCGCAGAGCTTGTTGAACAAGGTGGCGTCATCGCCTATCCAACAGAGGCGGTATA
TGGCTTAGGATGTGATCCCGACAATGACGATGCCATTGAACGCTTATTGGAAATAAAACTGCGCCCTTGGCAGAAAGGCC
TCATTTTGGTCGCTGGCGATTATCAGCAATTATTGCCTTATATTGATGAATCTCAGTTAAGCGCAGAGCAGTTAGCGTTT
GTTCATAGCAAGTGGCCGGGACCTTTCACCTTTATTATGCCGGTTAAGCCTGGTCTTTCTAATTTGCTAAGTGGCAGTTT
TGACTCGATTGCTGTGCGAGTGACTGCCCATGAGGGCGTTAAAGCCTTATGTGCAGCAATTAATAAACCGATAGTTTCAA
CAAGCGCAAACTTGACAGGCCAAGACCCTGCATTATCTGGAGCCGCGGTTAAGCAGCAGTTTGAAGGTATTATTGCGGGC
TTGGTGATAGGTGACTTAGGGATTCAGGCGTCGCCATCAACAATTATCGATGCCAAGAGTGGACAAGTTATAAGAAAAGG
CTAA

Upstream 100 bases:

>100_bases
GCGCCCTGTTTAAATAGTCATATTAACTTTCACTAATGCCGCTTTTGCATAATCATAGCGACATACATCGCGCGGATTAA
TATAAGGTGAAGAGAGACAA

Downstream 100 bases:

>100_bases
TCAGCTTCAACGAGGAATGATATGAATGCACCAGATTCAACACTAGTAAAAGCTTTCTTACTAGATCTTCAACATCGAAT
TTGTAATGGACTCGAGGCCC

Product: SUA5/yciO/yrdC domain-containing protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MLEVLPADVAELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGDYQQLLPYIDESQLSAEQLAF
VHSKWPGPFTFIMPVKPGLSNLLSGSFDSIAVRVTAHEGVKALCAAINKPIVSTSANLTGQDPALSGAAVKQQFEGIIAG
LVIGDLGIQASPSTIIDAKSGQVIRKG

Sequences:

>Translated_187_residues
MLEVLPADVAELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGDYQQLLPYIDESQLSAEQLAF
VHSKWPGPFTFIMPVKPGLSNLLSGSFDSIAVRVTAHEGVKALCAAINKPIVSTSANLTGQDPALSGAAVKQQFEGIIAG
LVIGDLGIQASPSTIIDAKSGQVIRKG
>Mature_187_residues
MLEVLPADVAELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGDYQQLLPYIDESQLSAEQLAF
VHSKWPGPFTFIMPVKPGLSNLLSGSFDSIAVRVTAHEGVKALCAAINKPIVSTSANLTGQDPALSGAAVKQQFEGIIAG
LVIGDLGIQASPSTIIDAKSGQVIRKG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=177, Percent_Identity=49.7175141242938, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI87081864, Length=186, Percent_Identity=30.1075268817204, Blast_Score=79, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6321269, Length=193, Percent_Identity=29.0155440414508, Blast_Score=65, Evalue=4e-12,
Organism=Drosophila melanogaster, GI78707274, Length=180, Percent_Identity=31.1111111111111, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_SHEHH (B0TLD6)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001672268.1
- ProteinModelPortal:   B0TLD6
- SMR:   B0TLD6
- GeneID:   5905100
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_0033
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- ProtClustDB:   CLSK905558
- BioCyc:   SHAL458817:SHAL_0033-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 19750; Mature: 19750

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEVLPADVAELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGD
CCCCCCHHHHHHHHCCCEEEECCHHEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC
YQQLLPYIDESQLSAEQLAFVHSKWPGPFTFIMPVKPGLSNLLSGSFDSIAVRVTAHEGV
HHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCEEEEEEECCCCH
KALCAAINKPIVSTSANLTGQDPALSGAAVKQQFEGIIAGLVIGDLGIQASPSTIIDAKS
HHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
GQVIRKG
CCEEECC
>Mature Secondary Structure
MLEVLPADVAELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGD
CCCCCCHHHHHHHHCCCEEEECCHHEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC
YQQLLPYIDESQLSAEQLAFVHSKWPGPFTFIMPVKPGLSNLLSGSFDSIAVRVTAHEGV
HHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCEEEEEEECCCCH
KALCAAINKPIVSTSANLTGQDPALSGAAVKQQFEGIIAGLVIGDLGIQASPSTIIDAKS
HHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
GQVIRKG
CCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA