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The map label for this gene is ycdC [C]

Identifier: 167039818

GI number: 167039818

Start: 1209711

End: 1210280

Strand: Direct

Name: ycdC [C]

Synonym: Teth514_1173

Alternate gene names: 167039818

Gene position: 1209711-1210280 (Clockwise)

Preceding gene: 167039817

Following gene: 167039819

Centisome position: 49.23

GC content: 30.35

Gene sequence:

>570_bases
ATGGAAGAAAGAAACCAATCACAAAGAATATTAAATGCTGCATATAAATGCATTTCAACTAAAGGCTATGCTAATGTTTC
GTTAAGAGATATTGCAGAGGAAGCTGGTGTTGTATTAAGCCAATTGCATTATTATTTTGGTAGTAAGGAAGGGCTTTTTA
CAGAGGTAATAAAGATGATGATAGATAAATATTTAGAAGAAATAAATGAAGCTTTGAGTATTGGAGAAACTGCAAAGGAT
AAGATGCTATCCTTAGTGAAATTTTTTAAAGACCTGTTAAGTAATAATCCGGGACTTTTTAAACTGTTGTACGATTTTAC
AGGTTTAGCCATGTGGTCCTCTTCTTTTAACAGTTTATTAAAGGATTTATTTAATGATTTATCTAAAATGATTGAGGAAA
AAATTTTAAGTAATAGTGCTTTAGGAGACAATTTTAAAAGTTATTCTCCACGAGCAGTAGCGAGAATGATACTTGGTGCA
ATGTTTGGTACGGGAATTCAAGTGATTTTAGATTCTAATGAAAATGAAATTTTGGATGCGTTAAATGCCATACAAATTAT
TTTTGAGTAA

Upstream 100 bases:

>100_bases
TTGGTTTAGCGATAGCTTTTGTCATGGTATTAGGTTTAGCAATTTCTATTTTCCGATCTGGGTGGCTTTAATAAATAAAC
TTCAAAAGGGGAAATCCAAG

Downstream 100 bases:

>100_bases
AATGGTGATGGAAAATGAGACCAAAAGTAGGACTTATACTAGGTGGTGGAGCAGCAAGAGGATATGCGCACTTAGGTATA
CTAAAAAGATTTGAAGAAGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MEERNQSQRILNAAYKCISTKGYANVSLRDIAEEAGVVLSQLHYYFGSKEGLFTEVIKMMIDKYLEEINEALSIGETAKD
KMLSLVKFFKDLLSNNPGLFKLLYDFTGLAMWSSSFNSLLKDLFNDLSKMIEEKILSNSALGDNFKSYSPRAVARMILGA
MFGTGIQVILDSNENEILDALNAIQIIFE

Sequences:

>Translated_189_residues
MEERNQSQRILNAAYKCISTKGYANVSLRDIAEEAGVVLSQLHYYFGSKEGLFTEVIKMMIDKYLEEINEALSIGETAKD
KMLSLVKFFKDLLSNNPGLFKLLYDFTGLAMWSSSFNSLLKDLFNDLSKMIEEKILSNSALGDNFKSYSPRAVARMILGA
MFGTGIQVILDSNENEILDALNAIQIIFE
>Mature_189_residues
MEERNQSQRILNAAYKCISTKGYANVSLRDIAEEAGVVLSQLHYYFGSKEGLFTEVIKMMIDKYLEEINEALSIGETAKD
KMLSLVKFFKDLLSNNPGLFKLLYDFTGLAMWSSSFNSLLKDLFNDLSKMIEEKILSNSALGDNFKSYSPRAVARMILGA
MFGTGIQVILDSNENEILDALNAIQIIFE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21266; Mature: 21266

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEERNQSQRILNAAYKCISTKGYANVSLRDIAEEAGVVLSQLHYYFGSKEGLFTEVIKMM
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IDKYLEEINEALSIGETAKDKMLSLVKFFKDLLSNNPGLFKLLYDFTGLAMWSSSFNSLL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
KDLFNDLSKMIEEKILSNSALGDNFKSYSPRAVARMILGAMFGTGIQVILDSNENEILDA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHH
LNAIQIIFE
HHHHHHHCC
>Mature Secondary Structure
MEERNQSQRILNAAYKCISTKGYANVSLRDIAEEAGVVLSQLHYYFGSKEGLFTEVIKMM
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IDKYLEEINEALSIGETAKDKMLSLVKFFKDLLSNNPGLFKLLYDFTGLAMWSSSFNSLL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
KDLFNDLSKMIEEKILSNSALGDNFKSYSPRAVARMILGAMFGTGIQVILDSNENEILDA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHH
LNAIQIIFE
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA